Showing 1 - 20 results of 56 for search 'Kathryn E Holt', query time: 0.06s Refine Results
  1. 1
    Benchmarking of long-read assemblers for prokaryote whole genome sequencing [version 4; peer review: 4 approved]

    Benchmarking of long-read assemblers for prokaryote whole genome sequencing [version 4; peer review: 4 approved] by Ryan R. Wick, Kathryn E. Holt

    Published 2021-02-01
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  2. 2
    Benchmarking of long-read assemblers for prokaryote whole genome sequencing [version 1; peer review: 2 approved]

    Benchmarking of long-read assemblers for prokaryote whole genome sequencing [version 1; peer review: 2 approved] by Ryan R. Wick, Kathryn E. Holt

    Published 2019-12-01
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  3. 3
    Performance of neural network basecalling tools for Oxford Nanopore sequencing

    Performance of neural network basecalling tools for Oxford Nanopore sequencing by Ryan R. Wick, Louise M. Judd, Kathryn E. Holt

    Published 2019-06-01
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  4. 4
    Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing

    Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing by Ryan R. Wick, Louise M. Judd, Kathryn E. Holt

    Published 2023-03-01
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  5. 5
    Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks.

    Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks. by Ryan R Wick, Louise M Judd, Kathryn E Holt

    Published 2018-11-01
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  6. 6
    Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing.

    Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing. by Ryan R Wick, Louise M Judd, Kathryn E Holt

    Published 2023-03-01
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  7. 7
    Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

    Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. by Ryan R Wick, Louise M Judd, Claire L Gorrie, Kathryn E Holt

    Published 2017-06-01
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  8. 8
    Impact of insertion sequences on convergent evolution of Shigella species.

    Impact of insertion sequences on convergent evolution of Shigella species. by Jane Hawkey, Jonathan M Monk, Helen Billman-Jacobe, Bernhard Palsson, Kathryn E Holt

    Published 2020-07-01
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  9. 9
    Genomic Diversity and Antimicrobial Resistance of Haemophilus Colonizing the Airways of Young Children with Cystic Fibrosis

    Genomic Diversity and Antimicrobial Resistance of Haemophilus Colonizing the Airways of Young Children with Cystic Fibrosis by Stephen C. Watts, Louise M. Judd, Rosemary Carzino, Sarath Ranganathan, Kathryn E. Holt

    Published 2021-08-01
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  10. 10
    Detection and Typing of Plasmids in Acinetobacter baumannii Using rep Genes Encoding Replication Initiation Proteins

    Detection and Typing of Plasmids in Acinetobacter baumannii Using rep Genes Encoding Replication Initiation Proteins by Margaret M. C. Lam, Jonathan Koong, Kathryn E. Holt, Ruth M. Hall, Mehrad Hamidian

    Published 2023-02-01
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  11. 11
    Elucidation of pathways driving asthma pathogenesis: Development of a systems-level analytic strategy

    Elucidation of pathways driving asthma pathogenesis: Development of a systems-level analytic strategy by Michael L Walker, Kathryn E Holt, Kathryn E Holt, Gary Peter Anderson, Shu Mei Teo, Shu Mei Teo, Peter D Sly, Patrick G Holt, Patrick G Holt, Michael eInouye, Michael eInouye

    Published 2014-09-01
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  12. 12
    Epidemiology and genomic analysis of Klebsiella oxytoca from a single hospital network in Australia

    Epidemiology and genomic analysis of Klebsiella oxytoca from a single hospital network in Australia by James Stewart, Louise M. Judd, Adam Jenney, Kathryn E. Holt, Kelly L. Wyres, Jane Hawkey

    Published 2022-08-01
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  13. 13
    Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods

    Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods by Sebastian Duchene, David A. Duchene, Jemma L. Geoghegan, Zoe A. Dyson, Jane Hawkey, Kathryn E. Holt

    Published 2018-06-01
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  14. 14
    The inflated mitochondrial genomes of siphonous green algae reflect processes driving expansion of noncoding DNA and proliferation of introns

    The inflated mitochondrial genomes of siphonous green algae reflect processes driving expansion of noncoding DNA and proliferation of introns by Sonja I. Repetti, Christopher J. Jackson, Louise M. Judd, Ryan R. Wick, Kathryn E. Holt, Heroen Verbruggen

    Published 2020-01-01
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  15. 15
    Direct Nanopore Sequencing of mRNA Reveals Landscape of Transcript Isoforms in Apicomplexan Parasites

    Direct Nanopore Sequencing of mRNA Reveals Landscape of Transcript Isoforms in Apicomplexan Parasites by V. Vern Lee, Louise M. Judd, Aaron R. Jex, Kathryn E. Holt, Christopher J. Tonkin, Stuart A. Ralph

    Published 2021-04-01
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  16. 16
    A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex

    A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex by Margaret M. C. Lam, Ryan R. Wick, Stephen C. Watts, Louise T. Cerdeira, Kelly L. Wyres, Kathryn E. Holt

    Published 2021-07-01
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  17. 17
    Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae

    Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae by Margaret M. C. Lam, Kelly L. Wyres, Louise M. Judd, Ryan R. Wick, Adam Jenney, Sylvain Brisse, Kathryn E. Holt

    Published 2018-10-01
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  18. 18
    Trycycler: consensus long-read assemblies for bacterial genomes

    Trycycler: consensus long-read assemblies for bacterial genomes by Ryan R. Wick, Louise M. Judd, Louise T. Cerdeira, Jane Hawkey, Guillaume Méric, Ben Vezina, Kelly L. Wyres, Kathryn E. Holt

    Published 2021-09-01
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  19. 19
    Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in urban Dhaka, Bangladesh from 2004 to 2016.

    Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in urban Dhaka, Bangladesh from 2004 to 2016. by Sadia Isfat Ara Rahman, Zoe A Dyson, Elizabeth J Klemm, Farhana Khanam, Kathryn E Holt, Emran Kabir Chowdhury, Gordon Dougan, Firdausi Qadri

    Published 2020-02-01
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  20. 20
    ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting

    ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting by Jane Hawkey, Kelly L. Wyres, Louise M. Judd, Taylor Harshegyi, Luke Blakeway, Ryan R. Wick, Adam W. J. Jenney, Kathryn E. Holt

    Published 2022-08-01
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