DREAM target reactivation by core transcriptional regulators supports neuroblastoma growth by Bieke Decaesteker, Katleen De Preter, Frank Speleman

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Opportunities and challenges in interpretable deep learning for drug sensitivity prediction of cancer cells by Bikash Ranjan Samal, Bikash Ranjan Samal, Bikash Ranjan Samal, Jens Uwe Loers, Jens Uwe Loers, Jens Uwe Loers, Jens Uwe Loers, Vanessa Vermeirssen, Vanessa Vermeirssen, Vanessa Vermeirssen, Vanessa Vermeirssen, Katleen De Preter, Katleen De Preter, Katleen De Preter

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IncGraph: Incremental graphlet counting for topology optimisation. by Robrecht Cannoodt, Joeri Ruyssinck, Jan Ramon, Katleen De Preter, Yvan Saeys

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Cancer gene prioritization for targeted resequencing using FitSNP scores. by Annelies Fieuw, Bram De Wilde, Frank Speleman, Jo Vandesompele, Katleen De Preter

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Evaluation of single-sample network inference methods for precision oncology by Joke Deschildre, Boris Vandemoortele, Jens Uwe Loers, Katleen De Preter, Vanessa Vermeirssen

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Circulating immune cell dynamics as outcome predictors for immunotherapy in non-small cell lung cancer by Karim Vermaelen, Alvaro Marcos Rubio, Celine Everaert, Eufra Van Damme, Katleen De Preter

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Benchmarking of cell type deconvolution pipelines for transcriptomics data by Francisco Avila Cobos, José Alquicira-Hernandez, Joseph E. Powell, Pieter Mestdagh, Katleen De Preter

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Evaluation of a marker independent isolation method for circulating tumor cells in esophageal adenocarcinoma. by Annouck Philippron, Lieven Depypere, Steffi Oeyen, Bram De Laere, Charlotte Vandeputte, Philippe Nafteux, Katleen De Preter, Piet Pattyn

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Zipper plot: visualizing transcriptional activity of genomic regions by Francisco Avila Cobos, Jasper Anckaert, Pieter-Jan Volders, Celine Everaert, Dries Rombaut, Jo Vandesompele, Katleen De Preter, Pieter Mestdagh

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Genome-wide study of the effect of blood collection tubes on the cell-free DNA methylome by Ruben Van Paemel, Andries De Koker, Christa Caggiano, Annelien Morlion, Pieter Mestdagh, Bram De Wilde, Jo Vandesompele, Katleen De Preter

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Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions by Kathleen Schoofs, Annouck Philippron, Francisco Avila Cobos, Jan Koster, Steve Lefever, Jasper Anckaert, Danny De Looze, Jo Vandesompele, Piet Pattyn, Katleen De Preter

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A p53 drug response signature identifies prognostic genes in high-risk neuroblastoma. by Eveline Barbieri, Katleen De Preter, Mario Capasso, Peter Johansson, Tsz-Kwong Man, Zaowen Chen, Paris Stowers, Gian Paolo Tonini, Frank Speleman, Jason M Shohet

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ViVar: a comprehensive platform for the analysis and visualization of structural genomic variation. by Tom Sante, Sarah Vergult, Pieter-Jan Volders, Wigard P Kloosterman, Geert Trooskens, Katleen De Preter, Annelies Dheedene, Frank Speleman, Tim De Meyer, Björn Menten

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From DNA Copy Number Gains and Tumor Dependencies to Novel Therapeutic Targets for High-Risk Neuroblastoma by Bieke Decaesteker, Kaat Durinck, Nadine Van Roy, Bram De Wilde, Christophe Van Neste, Stéphane Van Haver, Stephen Roberts, Katleen De Preter, Vanessa Vermeirssen, Frank Speleman

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Digital PCR-based evaluation of nucleic acid extraction kit performance for the co-purification of cell-free DNA and RNA by Jill Deleu, Kathleen Schoofs, Anneleen Decock, Kimberly Verniers, Sofie Roelandt, Angie Denolf, Joke Verreth, Bram De Wilde, Tom Van Maerken, Katleen De Preter, Jo Vandesompele

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Case series on clinical applications of liquid biopsy in pediatric solid tumors: towards improved diagnostics and disease monitoring by Nina U. Gelineau, Nina U. Gelineau, Astrid van Barneveld, Atia Samim, Lieke Van Zogchel, Lieke Van Zogchel, Nathalie Lak, Nathalie Lak, Michelle L. Tas, Yvette Matser, Annelies M. C. Mavinkurve-Groothuis, Martine van Grotel, Jószef Zsiros, Natasha K. A. van Eijkelenburg, Rutger R. G. Knops, Roelof van Ewijk, Karin P. S. Langenberg, Ronald De Krijger, Ronald De Krijger, Laura S. Hiemcke-Jiwa, Laura S. Hiemcke-Jiwa, Ruben Van Paemel, Ruben Van Paemel, Ruben Van Paemel, Lotte Cornelli, Lotte Cornelli, Katleen De Preter, Katleen De Preter, Katleen De Preter, Bram De Wilde, Bram De Wilde, Bram De Wilde, Ellen Van Der Schoot, Godelieve Tytgat, Godelieve Tytgat

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N-cadherin in neuroblastoma disease: expression and clinical significance. by Tim Lammens, Katrien Swerts, Lara Derycke, Annemie De Craemer, Sara De Brouwer, Katleen De Preter, Nadine Van Roy, Jo Vandesompele, Frank Speleman, Jan Philippé, Yves Benoit, Klaus Beiske, Marc Bracke, Geneviève Laureys

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Human iPSC modeling recapitulates in vivo sympathoadrenal development and reveals an aberrant developmental subpopulation in familial neuroblastoma by Stéphane Van Haver, Yujie Fan, Sarah-Lee Bekaert, Celine Everaert, Wouter Van Loocke, Vittorio Zanzani, Joke Deschildre, Inés Fernandez Maestre, Adrianna Amaro, Vanessa Vermeirssen, Katleen De Preter, Ting Zhou, Alex Kentsis, Lorenz Studer, Frank Speleman, Stephen S. Roberts

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Minimally invasive classification of paediatric solid tumours using reduced representation bisulphite sequencing of cell-free DNA: a proof-of-principle study by Ruben Van Paemel, Andries De Koker, Charlotte Vandeputte, Lieke van Zogchel, Tim Lammens, Geneviève Laureys, Jo Vandesompele, Gudrun Schleiermacher, Mathieu Chicard, Nadine Van Roy, Ales Vicha, G.A.M. Tytgat, Nico Callewaert, Katleen De Preter, Bram De Wilde

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Mitotic Dysregulation at Tumor Initiation Creates a Therapeutic Vulnerability to Combination Anti-Mitotic and Pro-Apoptotic Agents for MYCN-Driven Neuroblastoma by Lei Zhai, Anushree Balachandran, Rebecca Larkin, Janith A. Seneviratne, Sylvia A. Chung, Amit Lalwani, Shoma Tsubota, Dominik Beck, Kenji Kadomatsu, Anneleen Beckers, Kaat Durink, Katleen De Preter, Frank Speleman, Michelle Haber, Murray D. Norris, Alexander Swarbrick, Belamy B. Cheung, Glenn M. Marshall, Daniel R. Carter

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