SAMQA: error classification and validation of high-throughput sequenced read data by Bressler Ryan, Killcoyne Sarah, Robinson Thomas, Boyle John

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Methods for visual mining of genomic and proteomic data atlases by Boyle John, Kreisberg Richard, Bressler Ryan, Killcoyne Sarah

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Systems biology driven software design for the research enterprise by Killcoyne Sarah, Cavnor Christopher, Boyle John, Shmulevich Ilya

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Adaptable data management for systems biology investigations by Burdick David, Cavnor Chris, Rovira Hector, Boyle John, Killcoyne Sarah, Shmulevich Ilya

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SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments by Rovira Hector, Ramsey Stephen A, Marzolf Bruz, Lin Jake, Killcoyne Sarah, Handcock Jeremy, Cavnor Chris C, Burdick David B, Bressler Ryan, Shmulevich Ilya, Boyle John

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Aneuploidy in targeted endoscopic biopsies outperforms other tissue biomarkers in the prediction of histologic progression of Barrett's oesophagus: A multi-centre prospective cohor... by Andreas V. Hadjinicolaou, Sanne N. van Munster, Achilleas Achilleos, Jose Santiago Garcia, Sarah Killcoyne, Krish Ragunath, Jacques J.G.H.M. Bergman, Rebecca C. Fitzgerald, Massimiliano di Pietro

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Mutational signature dynamics shaping the evolution of oesophageal adenocarcinoma by Sujath Abbas, Oriol Pich, Ginny Devonshire, Shahriar A. Zamani, Annalise Katz-Summercorn, Sarah Killcoyne, Calvin Cheah, Barbara Nutzinger, Nicola Grehan, Nuria Lopez-Bigas, OCCAMS Consortium, Rebecca C. Fitzgerald, Maria Secrier

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Enabling large-scale screening of Barrett’s esophagus using weakly supervised deep learning in histopathology by Kenza Bouzid, Harshita Sharma, Sarah Killcoyne, Daniel C. Castro, Anton Schwaighofer, Max Ilse, Valentina Salvatelli, Ozan Oktay, Sumanth Murthy, Lucas Bordeaux, Luiza Moore, Maria O’Donovan, Anja Thieme, Aditya Nori, Marcel Gehrung, Javier Alvarez-Valle

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The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic by Frankell, AM, Jammula, S, Li, X, Contino, G, Killcoyne, S, Abbas, S, Perner, J, Bower, L, Devonshire, G, Ococks, E, Grehan, N, Mok, J, O'Donovan, M, Macrae, S, Eldridge, MD, Tavaré, S, Oesophageal Cancer Clinical And Molecular Stratification (OCCAMS) Consortium, Fitzgerald, RC, Crichton, C

Rearrangement processes and structural variations show evidence of selection in oesophageal adenocarcinomas by Alvin Wei Tian Ng, Gianmarco Contino, Sarah Killcoyne, Ginny Devonshire, Ray Hsu, Sujath Abbas, Jing Su, Aisling M. Redmond, Jamie M. J. Weaver, Matthew D. Eldridge, Simon Tavaré, Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS) Consortium, Paul A. W. Edwards, Rebecca C. Fitzgerald

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