CRISPR in mobile genetic elements: counter-defense, inter-element competition and RNA-guided transposition by Eugene V. Koonin, Kira S. Makarova

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Evolutionary plasticity and functional versatility of CRISPR systems. by Eugene V Koonin, Kira S Makarova

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Evolutionary plasticity and functional versatility of CRISPR systems by Eugene V. Koonin, Kira S. Makarova

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Proposed Role for KaiC-Like ATPases as Major Signal Transduction Hubs in Archaea by Kira S. Makarova, Michael Y. Galperin, Eugene V. Koonin

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Evolution of replicative DNA polymerases in archaea and their contributions to the eukaryotic replication machinery by Kira S Makarova, Mart eKrupovic, Eugene V. Koonin

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Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales by Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin

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The complex domain architecture of SAMD9 family proteins, predicted STAND-like NTPases, suggests new links to inflammation and apoptosis by Sergei L. Mekhedov, Kira S. Makarova, Eugene V. Koonin

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A Unique Gene Module in Thermococcales Archaea Centered on a Hypervariable Protein Containing Immunoglobulin Domains by Kira S. Makarova, Yuri I. Wolf, Svetlana Karamycheva, Eugene V. Koonin

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Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions by Svetlana Karamycheva, Yuri I. Wolf, Erez Persi, Eugene V. Koonin, Kira S. Makarova

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CoCoNuTs are a diverse subclass of Type IV restriction systems predicted to target RNA by Ryan T Bell, Harutyun Sahakyan, Kira S Makarova, Yuri I Wolf, Eugene V Koonin

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Enzymatic Synthesis of Bioinformatically Predicted Microcin C-Like Compounds Encoded by Diverse Bacteria by Olga Bantysh, Marina Serebryakova, Kira S. Makarova, Svetlana Dubiley, Kirill A. Datsenko, Konstantin Severinov

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Reconstruction of the evolution of microbial defense systems by Pere Puigbò, Kira S. Makarova, David M. Kristensen, Yuri I. Wolf, Eugene V. Koonin

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Antimicrobial Peptides, Polymorphic Toxins, and Self-Nonself Recognition Systems in Archaea: an Untapped Armory for Intermicrobial Conflicts by Kira S. Makarova, Yuri I. Wolf, Svetlana Karamycheva, Dapeng Zhang, L. Aravind, Eugene V. Koonin

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Phylogenomics of Cas4 family nucleases by Sanjarbek Hudaiberdiev, Sergey Shmakov, Yuri I. Wolf, Michael P. Terns, Kira S. Makarova, Eugene V. Koonin

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Computational analysis of genes with lethal knockout phenotype and prediction of essential genes in archaea by Kira S. Makarova, Changyi Zhang, Yuri I. Wolf, Svetlana Karamycheva, Rachel J. Whitaker, Eugene V. Koonin

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CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems by Kira eMakarova, Vivek eAnantharaman, Nick eGrishin, Eugene V. Koonin, L eAravind

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The CRISPR Spacer Space Is Dominated by Sequences from Species-Specific Mobilomes by Sergey A. Shmakov, Vassilii Sitnik, Kira S. Makarova, Yuri I. Wolf, Konstantin V. Severinov, Eugene V. Koonin

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Regulatory sequence-based discovery of anti-defense genes in archaeal viruses by Yuvaraj Bhoobalan-Chitty, Shuanshuan Xu, Laura Martinez-Alvarez, Svetlana Karamycheva, Kira S. Makarova, Eugene V. Koonin, Xu Peng

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Novel bacteriophages containing a genome of another bacteriophage within their genomes. by Maud M Swanson, Brian Reavy, Kira S Makarova, Peter J Cock, David W Hopkins, Lesley Torrance, Eugene V Koonin, Michael Taliansky

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Diversity, origin, and evolution of the ESCRT systems by Kira S. Makarova, Victor Tobiasson, Yuri I. Wolf, Zhongyi Lu, Yang Liu, Siyu Zhang, Mart Krupovic, Meng Li, Eugene V. Koonin

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