Interpretable deep learning to uncover the molecular binding patterns determining TCR–epitope interaction predictions by Ceder Dens, Wout Bittremieux, Fabio Affaticati, Kris Laukens, Pieter Meysman

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A new Plasmodium vivax reference genome for South American isolates by Katlijn De Meulenaere, Bart Cuypers, Dionicia Gamboa, Kris Laukens, Anna Rosanas-Urgell

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HLA-DRB1 Alleles Associated with Lower Leishmaniasis Susceptibility Share Common Amino Acid Polymorphisms and Epitope Binding Repertoires by Nicky de Vrij, Pieter Meysman, Sofie Gielis, Wim Adriaensen, Kris Laukens, Bart Cuypers

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TransExION: a transformer based explainable similarity metric for comparing IONS in tandem mass spectrometry by Danh Bui-Thi, Youzhong Liu, Jennifer L. Lippens, Kris Laukens, Thomas De Vijlder

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Fragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOF by Charlotte Adams, Wassim Gabriel, Kris Laukens, Mario Picciani, Mathias Wilhelm, Wout Bittremieux, Kurt Boonen

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Recent advances in T-cell receptor repertoire analysis: Bridging the gap with multimodal single-cell RNA sequencing by Sebastiaan Valkiers, Nicky de Vrij, Sofie Gielis, Sara Verbandt, Benson Ogunjimi, Kris Laukens, Pieter Meysman

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Proteomic Assessment of C57BL/6 Hippocampi after Non-Selective Pharmacological Inhibition of Nitric Oxide Synthase Activity: Implications of Seizure-like Neuronal Hyperexcitability... by Jhana O. Hendrickx, Charlotte Adams, Anne Sieben, Kris Laukens, Debby Van Dam, Guido R. Y. De Meyer

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Multi-View Learning to Unravel the Different Levels Underlying Hepatitis B Vaccine Response by Fabio Affaticati, Esther Bartholomeus, Kerry Mullan, Pierre Van Damme, Philippe Beutels, Benson Ogunjimi, Kris Laukens, Pieter Meysman

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The Absence of C-5 DNA Methylation in <i>Leishmania donovani</i> Allows DNA Enrichment from Complex Samples by Bart Cuypers, Franck Dumetz, Pieter Meysman, Kris Laukens, Géraldine De Muylder, Jean-Claude Dujardin, Malgorzata Anna Domagalska

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Selective whole-genome sequencing of Plasmodium parasites directly from blood samples by nanopore adaptive sampling by Katlijn De Meulenaere, Wim L. Cuypers, Julia M. Gauglitz, Pieter Guetens, Anna Rosanas-Urgell, Kris Laukens, Bart Cuypers

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The dwarf &amp; pale leaf mutation reduces chloroplast numbers, resulting in sugar depletion that inhibits leaf growth of maize seedlings by Hamada AbdElgawad, Katrien Sprangers, Sofie Thys, Isabel Pintelon, Bart Cuypers, Mohamed A. El-Tayeb, Clifford Weil, Kris Laukens, Gerrit T.S. Beemster

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Leveraging T-cell receptor – epitope recognition models to disentangle unique and cross-reactive T-cell response to SARS-CoV-2 during COVID-19 progression/resolution by Anna Postovskaya, Anna Postovskaya, Anna Postovskaya, Anna Postovskaya, Alexandra Vujkovic, Alexandra Vujkovic, Alexandra Vujkovic, Tessa de Block, Lida van Petersen, Maartje van Frankenhuijsen, Isabel Brosius, Emmanuel Bottieau, Christophe Van Dijck, Christophe Van Dijck, Caroline Theunissen, Sabrina H. van Ierssel, Sabrina H. van Ierssel, Erika Vlieghe, Esther Bartholomeus, Esther Bartholomeus, Kerry Mullan, Kerry Mullan, Kerry Mullan, Wim Adriaensen, Guido Vanham, Benson Ogunjimi, Benson Ogunjimi, Benson Ogunjimi, Benson Ogunjimi, Kris Laukens, Kris Laukens, Kris Laukens, Koen Vercauteren, Pieter Meysman, Pieter Meysman, Pieter Meysman

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A machine-learning based model for automated recommendation of individualized treatment of rifampicin-resistant tuberculosis. by Lennert Verboven, Steven Callens, John Black, Gary Maartens, Kelly E Dooley, Samantha Potgieter, Ruben Cartuyvels, SMARTT team, Kris Laukens, Robin M Warren, Annelies Van Rie

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Lack of strong innate immune reactivity renders macrophages alone unable to control productive Varicella-Zoster Virus infection in an isogenic human iPSC-derived neuronal co-cultur... by Elise Van Breedam, Tamariche Buyle-Huybrecht, Tamariche Buyle-Huybrecht, Tamariche Buyle-Huybrecht, Jonas Govaerts, Jonas Govaerts, Jonas Govaerts, Pieter Meysman, Pieter Meysman, Pieter Meysman, Andrea Bours, Marlies Boeren, Marlies Boeren, Marlies Boeren, Julia Di Stefano, Thalissa Caers, Thalissa Caers, Hans De Reu, Hans De Reu, Laura Dirkx, Jolien Schippers, Esther Bartholomeus, Marielle Lebrun, Catherine Sadzot-Delvaux, Paulina Rybakowska, Marta E. Alarcón-Riquelme, Concepción Marañón, Kris Laukens, Kris Laukens, Kris Laukens, Peter Delputte, Peter Delputte, Benson Ogunjimi, Benson Ogunjimi, Benson Ogunjimi, Benson Ogunjimi, Peter Ponsaerts, Peter Ponsaerts

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IL-22-Activated <i>MUC13</i> Impacts on Colonic Barrier Function through JAK1/STAT3, SNAI1/ZEB1 and ROCK2/MAPK Signaling by Tom Breugelmans, Wout Arras, Baptiste Oosterlinck, Aranzazu Jauregui-Amezaga, Michaël Somers, Bart Cuypers, Kris Laukens, Joris G. De Man, Heiko U. De Schepper, Benedicte Y. De Winter, Annemieke Smet

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Activation of Interferon-Stimulated Genes following Varicella-Zoster Virus Infection in a Human iPSC-Derived Neuronal In Vitro Model Depends on Exogenous Interferon-α by Marlies Boeren, Elise Van Breedam, Tamariche Buyle-Huybrecht, Marielle Lebrun, Pieter Meysman, Catherine Sadzot-Delvaux, Viggo F. Van Tendeloo, Geert Mortier, Kris Laukens, Benson Ogunjimi, Peter Ponsaerts, Peter Delputte

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Viral Evolution and Immunology of SARS-CoV-2 in a Persistent Infection after Treatment with Rituximab by Nathalie Van der Moeren, Philippe Selhorst, My Ha, Laura Heireman, Pieter-Jan Van Gaal, Dimitri Breems, Pieter Meysman, Kris Laukens, Walter Verstrepen, Natasja Van Gasse, Benson Ogunjimi, Kevin K. Arien, Reinout Naesens

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Kynurenine pathway abnormalities are state-specific but not diagnosis-specific in schizophrenia and bipolar disorder by Katrien Skorobogatov, Valérie Autier, Marianne Foiselle, Jean-Romain Richard, Wahid Boukouaci, Ching-Lien Wu, Sophie Raynal, Christel Carbonne, Kris Laukens, Pieter Meysman, Violette Coppens, Philippe le Corvoisier, Caroline Barau, Livia De Picker, Manuel Morrens, Ryad Tamouza, Marion Leboyer

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Dietary flavanols modulate the transcription of genes associated with cardiovascular pathology without changes in their DNA methylation state. by Dragan Milenkovic, Wim Vanden Berghe, Céline Boby, Christine Leroux, Ken Declerck, Katarzyna Szarc vel Szic, Karen Heyninck, Kris Laukens, Martin Bizet, Matthieu Defrance, Sarah Dedeurwaerder, Emilie Calonne, Francois Fuks, Guy Haegeman, Guido R M M Haenen, Aalt Bast, Antje R Weseler

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Persistent T cell unresponsiveness associated with chronic visceral leishmaniasis in HIV-coinfected patients by Nicky de Vrij, Julia Pollmann, Antonio M. Rezende, Ana V. Ibarra-Meneses, Thao-Thy Pham, Wasihun Hailemichael, Mekibib Kassa, Tadfe Bogale, Roma Melkamu, Arega Yeshanew, Rezika Mohammed, Ermias Diro, Ilse Maes, Malgorzata A. Domagalska, Hanne Landuyt, Florian Vogt, Saskia van Henten, Kris Laukens, Bart Cuypers, Pieter Meysman, Hailemariam Beyene, Kasaye Sisay, Aderajew Kibret, Dagnew Mersha, Koert Ritmeijer, Johan van Griensven, Wim Adriaensen

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