Improved estimation of time-varying reproduction numbers at low case incidence and between epidemic waves. by Kris V Parag

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Point process analysis of noise in early invertebrate vision. by Kris V Parag, Glenn Vinnicombe

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Using information theory to optimise epidemic models for real-time prediction and estimation. by Kris V Parag, Christl A Donnelly

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Fundamental limits on inferring epidemic resurgence in real time using effective reproduction numbers. by Kris V Parag, Christl A Donnelly

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Using multiple sampling strategies to estimate SARS-CoV-2 epidemiological parameters from genomic sequencing data by Rhys P. D. Inward, Kris V. Parag, Nuno R. Faria

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An exact method for quantifying the reliability of end-of-epidemic declarations in real time. by Kris V Parag, Christl A Donnelly, Rahul Jha, Robin N Thompson

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Impact of spatiotemporal heterogeneity in COVID-19 disease surveillance on epidemiological parameters and case growth rates by Rhys P.D. Inward, Felix Jackson, Abhishek Dasgupta, Graham Lee, Anya Lindström Battle, Kris V. Parag, Moritz U.G. Kraemer

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Genomic Epidemiology of Early SARS-CoV-2 Transmission Dynamics, Gujarat, India by Jayna Raghwani, Louis du Plessis, John T. McCrone, Sarah C. Hill, Kris V. Parag, Julien Thézé, Dinesh Kumar, Apurva Puvar, Ramesh Pandit, Oliver G. Pybus, Guillaume Fournié, Madhvi Joshi, Chaitanya Joshi

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Tracking the emergence of disparities in the subnational spread of COVID-19 in Brazil using an online application for real-time data visualisation: A longitudinal analysis by Paul Mee, Neal Alexander, Philippe Mayaud, Felipe de Jesus Colón González, Sam Abbott, Andreza Aruska de Souza Santos, André Luís Acosta, Kris V. Parag, Rafael H.M. Pereira, Carlos A. Prete, Jr, Ester C. Sabino, Nuno R. Faria, Oliver J Brady

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Retrospective evaluation of real-time estimates of global COVID-19 transmission trends and mortality forecasts. by Sangeeta Bhatia, Kris V Parag, Jack Wardle, Rebecca K Nash, Natsuko Imai, Sabine L Van Elsland, Britta Lassmann, John S Brownstein, Angel Desai, Mark Herringer, Kara Sewalk, Sarah Claire Loeb, John Ramatowski, Gina Cuomo-Dannenburg, Elita Jauneikaite, H Juliette T Unwin, Steven Riley, Neil Ferguson, Christl A Donnelly, Anne Cori, Pierre Nouvellet

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Implementation of genomic surveillance of SARS-CoV-2 in the Caribbean: Lessons learned for sustainability in resource-limited settings. by Nikita S D Sahadeo, Soren Nicholls, Filipe R R Moreira, Áine O'Toole, Vernie Ramkissoon, Charles Whittaker, Verity Hill, John T McCrone, Nicholas Mohammed, Anushka Ramjag, Arianne Brown Jordan, Sarah C Hill, Risha Singh, Sue-Min Nathaniel-Girdharrie, Avery Hinds, Nuala Ramkissoon, Kris V Parag, Naresh Nandram, Roshan Parasram, Zobida Khan-Mohammed, Lisa Edghill, Lisa Indar, Aisha Andrewin, Rhonda Sealey-Thomas, Pearl McMillan, Ayoola Oyinloye, Kenneth George, Irad Potter, John Lee, David Johnson, Shawn Charles, Narine Singh, Jacquiline Bisesor-McKenzie, Hazel Laws, Sharon Belmar-George, Simone Keizer-Beache, Sharra Greenaway-Duberry, Nadia Ashwood, Jerome E Foster, Karla Georges, Rahul Naidu, Marsha Ivey, Stanley Giddings, Rajini Haraksingh, Adesh Ramsubhag, Jayaraj Jayaraman, Chinnaraja Chinnadurai, Christopher Oura, Oliver G Pybus, Joy St John, Gabriel Gonzalez-Escobar, Nuno R Faria, Christine V F Carrington

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Correction: Implementation of Genomic Surveillance of SARS-CoV-2 in the Caribbean: Lessons learned for sustainability in resource-limited settings. by Nikita S D Sahadeo, Soren Nicholls, Filipe R R Moreira, Áine O'Toole, Vernie Ramkissoon, Charles Whittaker, Verity Hill, John T McCrone, Nicholas Mohammed, Anushka Ramjag, Arianne Brown Jordan, Sarah C Hill, Risha Singh, Sue-Min Nathaniel-Girdharrie, Avery Hinds, Nuala Ramkissoon, Kris V Parag, Naresh Nandram, Roshan Parasram, Zobida Khan-Mohammed, Lisa Edghill, Lisa Indar, Aisha Andrewin, Rhonda Sealey-Thomas, Pearl McMillan, Ayoola Oyinloye, Kenneth George, Irad Potter, John Lee, David Johnson, Shawn Charles, Narine Singh, Jacquiline Bisesor-McKenzie, Hazel Laws, Sharon Belmar-George, Simone Keizer-Beache, Sharra Greenaway-Duberry, Nadia Ashwood, Jerome E Foster, Karla Georges, Rahul Naidu, Marsha Ivey, Stanley Giddings, Rajini Haraksingh, Adesh Ramsubhag, Jayaraj Jayaraman, Chinnaraja Chinnadurai, Christopher Oura, Oliver G Pybus, Joy St John, Gabriel Gonzalez-Escobar, Nuno R Faria, Christine V F Carrington

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Implementation of genomic surveillance of SARS-CoV-2 in the Caribbean: Lessons learned for sustainability in resource-limited settings by Nikita S. D. Sahadeo, Soren Nicholls, Filipe R. R. Moreira, Áine O’Toole, Vernie Ramkissoon, Charles Whittaker, Verity Hill, John T. McCrone, Nicholas Mohammed, Anushka Ramjag, Arianne Brown Jordan, Sarah C. Hill, Risha Singh, Sue-Min Nathaniel-Girdharrie, Avery Hinds, Nuala Ramkissoon, Kris V. Parag, Naresh Nandram, Roshan Parasram, Zobida Khan-Mohammed, Lisa Edghill, Lisa Indar, Aisha Andrewin, Rhonda Sealey-Thomas, Pearl McMillan, Ayoola Oyinloye, Kenneth George, Irad Potter, John Lee, David Johnson, Shawn Charles, Narine Singh, Jacquiline Bisesor-McKenzie, Hazel Laws, Sharon Belmar-George, Simone Keizer-Beache, Sharra Greenaway-Duberry, Nadia Ashwood, Jerome E. Foster, Karla Georges, Rahul Naidu, Marsha Ivey, Stanley Giddings, Rajini Haraksingh, Adesh Ramsubhag, Jayaraj Jayaraman, Chinnaraja Chinnadurai, Christopher Oura, Oliver G. Pybus, Joy St. John, Gabriel Gonzalez-Escobar, Nuno R. Faria, Christine V. F. Carrington

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Database of epidemic trends and control measures during the first wave of COVID-19 in mainland China by Han Fu, Haowei Wang, Xiaoyue Xi, Adhiratha Boonyasiri, Yuanrong Wang, Wes Hinsley, Keith J. Fraser, Ruth McCabe, Daniela Olivera Mesa, Janetta Skarp, Alice Ledda, Tamsin Dewé, Amy Dighe, Peter Winskill, Sabine L. van Elsland, Kylie E.C. Ainslie, Marc Baguelin, Samir Bhatt, Olivia Boyd, Nicholas F. Brazeau, Lorenzo Cattarino, Giovanni Charles, Helen Coupland, Zulma M. Cucunuba, Gina Cuomo-Dannenburg, Christl A. Donnelly, Ilaria Dorigatti, Oliver D. Eales, Richard G. FitzJohn, Seth Flaxman, Katy A.M. Gaythorpe, Azra C. Ghani, William D. Green, Arran Hamlet, Katharina Hauck, David J. Haw, Benjamin Jeffrey, Daniel J. Laydon, John A. Lees, Thomas Mellan, Swapnil Mishra, Gemma Nedjati-Gilani, Pierre Nouvellet, Lucy Okell, Kris V. Parag, Manon Ragonnet-Cronin, Steven Riley, Nora Schmit, Hayley A. Thompson, H.Juliette T. Unwin, Robert Verity, Michaela A.C. Vollmer, Erik Volz, Patrick G.T. Walker, Caroline E. Walters, Oliver J. Watson, Charles Whittaker, Lilith K. Whittles, Natsuko Imai, Sangeeta Bhatia, Neil M. Ferguson

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Potential impact of the COVID-19 pandemic on HIV, tuberculosis, and malaria in low-income and middle-income countries: a modelling study by Alexandra B Hogan, PhD, Britta L Jewell, PhD, Ellie Sherrard-Smith, PhD, Juan F Vesga, PhD, Oliver J Watson, PhD, Charles Whittaker, MSc, Arran Hamlet, PhD, Jennifer A Smith, DPhil, Peter Winskill, PhD, Robert Verity, PhD, Marc Baguelin, PhD, John A Lees, PhD, Lilith K Whittles, PhD, Kylie E C Ainslie, PhD, Samir Bhatt, DPhil, Adhiratha Boonyasiri, MD, Nicholas F Brazeau, PhD, Lorenzo Cattarino, PhD, Laura V Cooper, MPhil, Helen Coupland, MRes, Gina Cuomo-Dannenburg, MMath, Amy Dighe, MRes, Bimandra A Djaafara, MRes, Christl A Donnelly, ProfScD, Jeff W Eaton, PhD, Sabine L van Elsland, PhD, Richard G FitzJohn, PhD, Han Fu, PhD, Katy A M Gaythorpe, PhD, William Green, MRes, David J Haw, PhD, Sarah Hayes, MSc, Wes Hinsley, PhD, Natsuko Imai, PhD, Daniel J Laydon, PhD, Tara D Mangal, PhD, Thomas A Mellan, PhD, Swapnil Mishra, PhD, Gemma Nedjati-Gilani, PhD, Kris V Parag, PhD, Hayley A Thompson, MPH, H Juliette T Unwin, PhD, Michaela A C Vollmer, PhD, Caroline E Walters, PhD, Haowei Wang, MSc, Yuanrong Wang, Xiaoyue Xi, MSc, Neil M Ferguson, ProfDPhil, Lucy C Okell, PhD, Thomas S Churcher, PhD, Nimalan Arinaminpathy, DPhil, Azra C Ghani, ProfPhD, Patrick G T Walker, PhD, Timothy B Hallett, ProfPhD

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