Navigating the Zika panic [version 1; referees: 2 approved] by Nathan D. Grubaugh, Kristian G. Andersen

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Foxp3 interacts with c-Rel to mediate NF-κB repression. by Louiza Loizou, Kristian G Andersen, Alexander G Betz

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Specific immunosuppression with inducible Foxp3-transduced polyclonal T cells. by Kristian G Andersen, Tracey Butcher, Alexander G Betz

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Comparative genomics reveals key gain-of-function events in Foxp3 during regulatory T cell evolution by Kristian G Andersen, Jesper K Nissen, Alexander G Betz

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The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding. by Xin Xie, Michael J T Stubbington, Jesper K Nissen, Kristian G Andersen, Daniel Hebenstreit, Sarah A Teichmann, Alexander G Betz

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Inter-individual variation in objective measure of reactogenicity following COVID-19 vaccination via smartwatches and fitness bands by Giorgio Quer, Matteo Gadaleta, Jennifer M. Radin, Kristian G. Andersen, Katie Baca-Motes, Edward Ramos, Eric J. Topol, Steven R. Steinhubl

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Twenty years of West Nile virus spread and evolution in the Americas visualized by Nextstrain. by James Hadfield, Anderson F Brito, Daniele M Swetnam, Chantal B F Vogels, Ryan E Tokarz, Kristian G Andersen, Ryan C Smith, Trevor Bedford, Nathan D Grubaugh

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Upper Airway Epithelial Tissue Transcriptome Analysis Reveals Immune Signatures Associated with COVID-19 Severity in Ghanaians by John Demby Sandi, Joshua I. Levy, Kesego Tapela, Mark Zeller, Joshua Afari Yeboah, Daniel Frimpong Saka, Donald S. Grant, Gordon A. Awandare, Peter K. Quashie, Kristian G. Andersen, Lily Paemka

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Evaluation of the Potential Impact of Ebola Virus Genomic Drift on the Efficacy of Sequence-Based Candidate Therapeutics by Jeffrey R. Kugelman, Mariano Sanchez-Lockhart, Kristian G. Andersen, Stephen Gire, Daniel J. Park, Rachel Sealfon, Aaron E. Lin, Shirlee Wohl, Pardis C. Sabeti, Jens H. Kuhn, Gustavo F. Palacios

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Zika Virus Non-Structural Protein 1 Antigen-Capture Immunoassay by Brandon J. Beddingfield, Jessica N. Hartnett, Russell B. Wilson, Peter C. Kulakosky, Kristian G. Andersen, Refugio Robles-Sikisaka, Nathan D. Grubaugh, Argelia Aybar, Maria-Zunilla Nunez, Cesar D. Fermin, Robert F. Garry

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Reporter Assays for Ebola Virus Nucleoprotein Oligomerization, Virion-Like Particle Budding, and Minigenome Activity Reveal the Importance of Nucleoprotein Amino Acid Position 111 by Aaron E. Lin, William E. Diehl, Yingyun Cai, Courtney L. Finch, Chidiebere Akusobi, Robert N. Kirchdoerfer, Laura Bollinger, Stephen F. Schaffner, Elizabeth A. Brown, Erica Ollmann Saphire, Kristian G. Andersen, Jens H. Kuhn, Jeremy Luban, Pardis C. Sabeti

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Genomic and phenotypic analyses suggest moderate fitness differences among Zika virus lineages by Glenn Oliveira, Chantal B. F. Vogels, Ashley Zolfaghari, Sharada Saraf, Raphaelle Klitting, James Weger-Lucarelli, Karla P. Leon, Carlos O. Ontiveros, Rimjhim Agarwal, Konstantin A. Tsetsarkin, Eva Harris, Gregory D. Ebel, Shirlee Wohl, Nathan D. Grubaugh, Kristian G. Andersen

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Genomic and phenotypic analyses suggest moderate fitness differences among Zika virus lineages. by Glenn Oliveira, Chantal B F Vogels, Ashley Zolfaghari, Sharada Saraf, Raphaelle Klitting, James Weger-Lucarelli, Karla P Leon, Carlos O Ontiveros, Rimjhim Agarwal, Konstantin A Tsetsarkin, Eva Harris, Gregory D Ebel, Shirlee Wohl, Nathan D Grubaugh, Kristian G Andersen

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Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework by Simon Dellicour, Sebastian Lequime, Bram Vrancken, Mandev S. Gill, Paul Bastide, Karthik Gangavarapu, Nathaniel L. Matteson, Yi Tan, Louis du Plessis, Alexander A. Fisher, Martha I. Nelson, Marius Gilbert, Marc A. Suchard, Kristian G. Andersen, Nathan D. Grubaugh, Oliver G. Pybus, Philippe Lemey

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SARS-CoV-2 genomic surveillance in wastewater as a model for monitoring evolution of endemic viruses by Mukhlid Yousif, Said Rachida, Setshaba Taukobong, Nkosenhle Ndlovu, Chinwe Iwu-Jaja, Wayne Howard, Shelina Moonsamy, Nompilo Mhlambi, Sipho Gwala, Joshua I. Levy, Kristian G. Andersen, Cathrine Scheepers, Anne von Gottberg, Nicole Wolter, Jinal N. Bhiman, Daniel Gyamfi Amoako, Arshad Ismail, Melinda Suchard, Kerrigan McCarthy

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An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar by Nathan D. Grubaugh, Karthik Gangavarapu, Joshua Quick, Nathaniel L. Matteson, Jaqueline Goes De Jesus, Bradley J. Main, Amanda L. Tan, Lauren M. Paul, Doug E. Brackney, Saran Grewal, Nikos Gurfield, Koen K. A. Van Rompay, Sharon Isern, Scott F. Michael, Lark L. Coffey, Nicholas J. Loman, Kristian G. Andersen

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Successful Clearance of 300 Day SARS-CoV-2 Infection in a Subject with B-Cell Depletion Associated Prolonged (B-DEAP) COVID by REGEN-COV Anti-Spike Monoclonal Antibody Cocktail by Arnaud C. Drouin, Marc W. Theberge, Sharon Y. Liu, Allison R. Smither, Shelby M. Flaherty, Mark Zeller, Gregory P. Geba, Peter Reynaud, W. Benjamin Rothwell, Alfred P. Luk, Di Tian, Matthew L. Boisen, Luis M. Branco, Kristian G. Andersen, James E. Robinson, Robert F. Garry, Dahlene N. Fusco

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Utilizing river and wastewater as a SARS-CoV-2 surveillance tool in settings with limited formal sewage systems by Kayla G. Barnes, Joshua I. Levy, Jillian Gauld, Jonathan Rigby, Oscar Kanjerwa, Christopher B. Uzzell, Chisomo Chilupsya, Catherine Anscombe, Christopher Tomkins-Tinch, Omar Mbeti, Edward Cairns, Herbert Thole, Shannon McSweeney, Marah G. Chibwana, Philip M. Ashton, Khuzwayo C. Jere, John Scott Meschke, Peter Diggle, Jennifer Cornick, Benjamin Chilima, Kondwani Jambo, Kristian G. Andersen, Gift Kawalazira, Steve Paterson, Tonney S. Nyirenda, Nicholas Feasey

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Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades by Raphaëlle Klitting, Liana E. Kafetzopoulou, Wim Thiery, Gytis Dudas, Sophie Gryseels, Anjali Kotamarthi, Bram Vrancken, Karthik Gangavarapu, Mambu Momoh, John Demby Sandi, Augustine Goba, Foday Alhasan, Donald S. Grant, Sylvanus Okogbenin, Ephraim Ogbaini-Emovo, Robert F. Garry, Allison R. Smither, Mark Zeller, Matthias G. Pauthner, Michelle McGraw, Laura D. Hughes, Sophie Duraffour, Stephan Günther, Marc A. Suchard, Philippe Lemey, Kristian G. Andersen, Simon Dellicour

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Ontogeny of the B- and T-cell response in a primary Zika virus infection of a dengue-naïve individual during the 2016 outbreak in Miami, FL. by Michael J Ricciardi, Diogo M Magnani, Alba Grifoni, Young-Chan Kwon, Martin J Gutman, Nathan D Grubaugh, Karthik Gangavarapu, Mark Sharkey, Cassia G T Silveira, Varian K Bailey, Núria Pedreño-Lopez, Lucas Gonzalez-Nieto, Helen S Maxwell, Aline Domingues, Mauricio A Martins, John Pham, Daniela Weiskopf, John Altman, Esper G Kallas, Kristian G Andersen, Mario Stevenson, Paola Lichtenberger, Hyeryun Choe, Stephen S Whitehead, Alessandro Sette, David I Watkins

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