Proteomic Analyses Identify Therapeutic Targets in Hepatocellular Carcinoma by Abdulkadir Elmas, Amaia Lujambio, Kuan-lin Huang

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Genetic dependency of Alzheimer’s disease-associated genes across cells and tissue types by Suraj K. Jaladanki, Abdulkadir Elmas, Gabriel Santos Malave, Kuan-lin Huang

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Genomic and molecular features distinguish young adult cancer from later-onset cancer by William Lee, Zishan Wang, Miriam Saffern, Tomi Jun, Kuan-lin Huang

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Phenome-wide and expression quantitative trait locus associations of coronavirus disease 2019 genetic risk loci by Chang Yoon Moon, Brian M. Schilder, Towfique Raj, Kuan-lin Huang

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Modeling the Transmission of the SARS-CoV-2 Delta Variant in a Partially Vaccinated Population by Ugo Avila-Ponce de León, Eric Avila-Vales, Kuan-lin Huang

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Genomic Determinants of Homologous Recombination Deficiency across Human Cancers by Tao Qing, Xinfeng Wang, Tomi Jun, Li Ding, Lajos Pusztai, Kuan-Lin Huang

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Machine learning models identify predictive features of patient mortality across dementia types by Jimmy Zhang, Luo Song, Zachary Miller, Kwun C. G. Chan, Kuan-lin Huang

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Prediction of individual COVID-19 diagnosis using baseline demographics and lab data by Jimmy Zhang, Tomi Jun, Jordi Frank, Sharon Nirenberg, Patricia Kovatch, Kuan-lin Huang

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Pan-cancer proteogenomic investigations identify post-transcriptional kinase targets by Abdulkadir Elmas, Serena Tharakan, Suraj Jaladanki, Matthew D. Galsky, Tao Liu, Kuan-lin Huang

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Yeast Tdh3 (glyceraldehyde 3-phosphate dehydrogenase) is a Sir2-interacting factor that regulates transcriptional silencing and rDNA recombination. by Alison E Ringel, Rebecca Ryznar, Hannah Picariello, Kuan-lin Huang, Asmitha G Lazarus, Scott G Holmes

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Multiscale protein networks systematically identify aberrant protein interactions and oncogenic regulators in seven cancer types by Won-Min Song, Abdulkadir Elmas, Richard Farias, Peng Xu, Xianxiao Zhou, Benjamin Hopkins, Kuan-lin Huang, Bin Zhang

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Calsarcin-2 May Play a Compensatory Role in the Development of Obese Sarcopenia by Yu-Cheng Liang, Kai-Pi Cheng, Hsin-Yu Kuo, Chung-Teng Wang, Hsuan-Wen Chou, Kuan-Lin Huang, Hung-Tsung Wu, Horng-Yih Ou

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Non-cancer-related pathogenic germline variants and expression consequences in ten-thousand cancer genomes by Zishan Wang, Xiao Fan, Yufeng Shen, Meghana S Pagadala, Rebecca Signer, Kamil J. Cygan, William G. Fairbrother, Hannah Carter, Wendy K. Chung, Kuan-lin Huang

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Multiethnic Investigation of Risk and Immune Determinants of COVID-19 Outcomes by Tomi Jun, Divij Mathew, Divij Mathew, Navya Sharma, Sharon Nirenberg, Hsin-Hui Huang, Patricia Kovatch, Edward John Wherry, Edward John Wherry, Kuan-lin Huang

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Ancestry-specific predisposing germline variants in cancer by Ninad Oak, Andrew D. Cherniack, R. Jay Mashl, TCGA Analysis Network, Fred R. Hirsch, Li Ding, Rameen Beroukhim, Zeynep H. Gümüş, Sharon E. Plon, Kuan-lin Huang

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Spatially interacting phosphorylation sites and mutations in cancer by Kuan-lin Huang, Adam D. Scott, Daniel Cui Zhou, Liang-Bo Wang, Amila Weerasinghe, Abdulkadir Elmas, Ruiyang Liu, Yige Wu, Michael C. Wendl, Matthew A. Wyczalkowski, Jessika Baral, Sohini Sengupta, Chin-Wen Lai, Kelly Ruggles, Samuel H. Payne, Benjamin Raphael, David Fenyö, Ken Chen, Gordon Mills, Li Ding

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Integrative omics analyses broaden treatment targets in human cancer by Sohini Sengupta, Sam Q. Sun, Kuan-lin Huang, Clara Oh, Matthew H. Bailey, Rajees Varghese, Matthew A. Wyczalkowski, Jie Ning, Piyush Tripathi, Joshua F. McMichael, Kimberly J. Johnson, Cyriac Kandoth, John Welch, Cynthia Ma, Michael C. Wendl, Samuel H. Payne, David Fenyö, Reid R. Townsend, John F. Dipersio, Feng Chen, Li Ding

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UQCRC1 engages cytochrome c for neuronal apoptotic cell death by Yu-Chien Hung, Kuan-Lin Huang, Po-Lin Chen, Jeng-Lin Li, Serena Huei-An Lu, Jui-Chih Chang, Han-Yi Lin, Wen-Chun Lo, Shu-Yi Huang, Tai-Ting Lee, Tai-Yi Lin, Yuzuru Imai, Nobutaka Hattori, Chin-San Liu, Su-Yi Tsai, Chun-Hong Chen, Chin-Hsien Lin, Chih-Chiang Chan

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Analysis of germline-driven ancestry-associated gene expression in cancers by Nyasha Chambwe, Rosalyn W. Sayaman, Donglei Hu, Scott Huntsman, Anab Kemal, Samantha Caesar-Johnson, Jean C. Zenklusen, Elad Ziv, Rameen Beroukhim, Andrew D. Cherniack, Jian Carrot-Zhang, Ashton C. Berger, Seunghun Han, Matthew Meyerson, Jeffrey S. Damrauer, Katherine A. Hoadley, Ina Felau, John A. Demchok, Michael K.A. Mensah, Roy Tarnuzzer, Zhining Wang, Liming Yang, Theo A. Knijnenburg, A. Gordon Robertson, Christina Yau, Christopher Benz, Kuan-lin Huang, Justin Y. Newberg, Garrett M. Frampton, R. Jay Mashl, Li Ding, Alessandro Romanel, Francesca Demichelis, Wanding Zhou, Peter W. Laird, Hui Shen, Christopher K. Wong, Joshua M. Stuart, Alexander J. Lazar, Xiuning Le, Ninad Oak

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Proteogenomic integration reveals therapeutic targets in breast cancer xenografts by Kuan-lin Huang, Shunqiang Li, Philipp Mertins, Song Cao, Harsha P. Gunawardena, Kelly V. Ruggles, D. R. Mani, Karl R. Clauser, Maki Tanioka, Jerry Usary, Shyam M. Kavuri, Ling Xie, Christopher Yoon, Jana W Qiao, John Wrobel, Matthew A. Wyczalkowski, Petra Erdmann-Gilmore, Jacqueline E. Snider, Jeremy Hoog, Purba Singh, Beifang Niu, Zhanfang Guo, Sam Qiancheng Sun, Souzan Sanati, Emily Kawaler, Xuya Wang, Adam Scott, Kai Ye, Michael D. McLellan, Michael C. Wendl, Anna Malovannaya, Jason M. Held, Michael A. Gillette, David Fenyö, Christopher R. Kinsinger, Mehdi Mesri, Henry Rodriguez, Sherri R. Davies, Charles M. Perou, Cynthia Ma, R. Reid Townsend, Xian Chen, Steven A. Carr, Matthew J. Ellis, Li Ding

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