Combinatorial prediction of marker panels from single‐cell transcriptomic data by Regev, Aviv, Kuchroo, Vijay K, Singer, Meromit

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A Model for How Signal Duration Can Determine Distinct Outcomes of Gene Transcription Programs by Fowler, Kevin Daniel, Kuchroo, Vijay K., Chakraborty, Arup K.

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Induction of pathogenic TH17 cells by inducible salt-sensing kinase SGK1 by Wu, Chuan, Yosef, Nir, Thalhamer, Theresa, Zhu, Chen, Xiao, Sheng, Kishi, Yasuhiro, Regev, Aviv, Kuchroo, Vijay K.

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RBPJ Controls Development of Pathogenic Th17 Cells by Regulating IL-23 Receptor Expression by Meyer zu Horste, Gerd, Wu, Chuan, Wang, Chao, Cong, Le, Pawlak, Mathias, Lee, Youjin, Elyaman, Wassim, Xiao, Sheng, Regev, Aviv, Kuchroo, Vijay K.

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Protein C receptor (PROCR) is a negative regulator of Th17 pathogenicity by Kishi, Yasuhiro, Kondo, Takaaki, Xiao, Sheng, Yosef, Nir, Gaublomme, Jellert, Wu, Chuan, Wang, Chao, Chihara, Norio, Regev, Aviv, Joller, Nicole, Kuchroo, Vijay K.

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Oct1 and OCA-B are selectively required for CD4 memory T cell function by Shakya, Arvind, Goren, Alon, Shalek, Alex, German, Cody N., Snook, Jeremy, Kuchroo, Vijay K., Yosef, Nir, Chan, Raymond C., Regev, Aviv, Williams, Matthew A., Tantin, Dean

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Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity by Gaublomme, Jellert T., Yosef, Nir, Lee, Youjin, Gertner, Rona S., Yang, Li V., Wu, Chuan, Pandolfi, Pier Paolo, Mak, Tak, Satija, Rahul, Kuchroo, Vijay K., Park, Hongkun, Regev, Aviv, Shalek, Alexander K

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Critical role of IRF1 and BATF in forming chromatin landscape during type 1 regulatory cell differentiation by Karwacz, Katarzyna, Miraldi, Emily R, Pokrovskii, Maria, Madi, Asaf, Yosef, Nir, Wortman, Ivo, Chen, Xi, Watters, Aaron, Carriero, Nicholas, Awasthi, Amit, Bonneau, Richard, Littman, Dan, Kuchroo, Vijay K, Regev, Aviv

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Induction and molecular signature of pathogenic T[subscript H]17 cells by Lee, Youjin, Awasthi, Amit, Yosef, Nir, Quintana, Francisco J., Xiao, Sheng, Peters, Anneli, Wu, Chuan, Kleinewietfeld, Markus, Kunder, Sharon, Hafler, David A., Sobel, Raymond A., Regev, Aviv, Kuchroo, Vijay K.

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T Follicular Regulatory Cell–Derived Fibrinogen-like Protein 2 Regulates Production of Autoantibodies and Induction of Systemic Autoimmunity by Sungnak, Waradon, Wagner, Allon, Kowalczyk, Monika S, Bod, Lloyd, Kye, Yoon-Chul, Sage, Peter T, Sharpe, Arlene H, Sobel, Raymond A, Quintana, Francisco J, Rozenblatt-Rosen, Orit, Regev, Aviv, Wang, Chao, Yosef, Nir, Kuchroo, Vijay K

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Tim-3 adapter protein Bat3 acts as an endogenous regulator of tolerogenic dendritic cell function by Tang, Ruihan, Acharya, Nandini, Subramanian, Ayshwarya, Purohit, Vinee, Tabaka, Marcin, Hou, Yu, He, Danyang, Dixon, Karen O, Lambden, Connor, Xia, Junrong, Rozenblatt-Rosen, Orit, Sobel, Raymond A, Wang, Chao, Regev, Aviv, Anderson, Ana C, Kuchroo, Vijay K

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Stem-like intestinal Th17 cells give rise to pathogenic effector T cells during autoimmunity by Schnell, Alexandra, Huang, Linglin, Singer, Meromit, Singaraju, Anvita, Barilla, Rocky M, Regan, Brianna ML, Bollhagen, Alina, Thakore, Pratiksha I, Dionne, Danielle, Delorey, Toni M, Pawlak, Mathias, Meyer zu Horste, Gerd, Rozenblatt-Rosen, Orit, Irizarry, Rafael A, Regev, Aviv, Kuchroo, Vijay K

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A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells by Singer, Meromit, Cong, Le, Kowalczyk, Monika S., Zhang, Huiyuan, Nyman, Jackson, Sakuishi, Kaori, Kurtulus, Sema, Gennert, David, Xia, Junrong, Kwon, John Y.H., Nevin, James, Herbst, Rebecca H., Yanai, Itai, Rozenblatt-Rosen, Orit, Kuchroo, Vijay K., Anderson, Ana C., Marjanovic, Nemanja, Regev, Aviv, Wang, Chao

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Calcitonin Gene-Related Peptide Negatively Regulates Alarmin-Driven Type 2 Innate Lymphoid Cell Responses by Wallrapp, Antonia, Burkett, Patrick R., Riesenfeld, Samantha J., Kim, Se-Jin, Christian, Elena, Abdulnour, Raja-Elie E., Thakore, Pratiksha I., Schnell, Alexandra, Lambden, Conner, Herbst, Rebecca H., Khan, Pavana, Tsujikawa, Kazutake, Xavier, Ramnik J., Chiu, Isaac M., Levy, Bruce D., Regev, Aviv, Kuchroo, Vijay K.

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Endogenous Glucocorticoid Signaling Regulates CD8+ T Cell Differentiation and Development of Dysfunction in the Tumor Microenvironment by Acharya, Nandini, Madi, Asaf, Zhang, Huiyuan, Klapholz, Max, Escobar, Giulia, Dulberg, Shai, Christian, Elena, Ferreira, Michelle, Dixon, Karen O, Fell, Geoffrey, Tooley, Katherine, Mangani, Davide, Xia, Junrong, Singer, Meromit, Bosenberg, Marcus, Neuberg, Donna, Rozenblatt-Rosen, Orit, Regev, Aviv, Kuchroo, Vijay K, Anderson, Ana C

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Transcriptional Atlas of Intestinal Immune Cells Reveals that Neuropeptide α-CGRP Modulates Group 2 Innate Lymphoid Cell Responses by Xu, Heping, Ding, Jiarui, Porter, Caroline, Wallrapp, Antonia, Tabaka, Marcin, Ma, Sai, Fu, Shujie, Guo, Xuanxuan, Riesenfeld, Samantha J., Su, Chienwen, Dionne, Danielle, Nguyen, Lan T., Lefkovith, Ariel, Ashenberg, Orr, Burkett, Patrick R., Shi, Hai Ning, Rozenblatt-Rosen, Orit, Graham, Daniel B., Kuchroo, Vijay K., Regev, Aviv, Xavier, Ramnik J.

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CD5L/AIM Regulates Lipid Biosynthesis and Restrains Th17 Cell Pathogenicity by Wang, Chao, Yosef, Nir, Gaublomme, Jellert, Wu, Chuan, Lee, Youjin, Clish, Clary B., Kaminski, Jim, Xiao, Sheng, Zu Horste, Gerd Meyer, Pawlak, Mathias, Kishi, Yasuhiro, Joller, Nicole, Karwacz, Katarzyna, Zhu, Chen, Ordovas-Montanes, Maria, Madi, Asaf, Wortman, Ivo, Miyazaki, Toru, Sobel, Raymond A., Park, Hongkun, Regev, Aviv, Kuchroo, Vijay K.

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Dynamic regulatory network controlling TH17 cell differentiation by Yosef, Nir, Shalek, Alex K., Gaublomme, Jellert T., Jin, Hulin, Lee, Youjin, Awasthi, Amit, Wu, Chuan, Karwacz, Katarzyna, Xiao, Sheng, Jorgolli, Marsela, Gennert, David, Satija, Rahul, Shakya, Arvind, Trombetta, John J., Pillai, Meenu R., Ratcliffe, Peter J., Coleman, Mathew L., Bix, Mark, Tantin, Dean, Park, Hongkun, Kuchroo, Vijay K., Regev, Aviv, Lu, Diana

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An IL-27-Driven Transcriptional Network Identifies Regulators of IL-10 Expression across T Helper Cell Subsets by Zhang, Huiyuan, Madi, Asaf, Yosef, Nir, Chihara, Norio, Awasthi, Amit, Pot, Caroline, Lambden, Conner, Srivastava, Amitabh, Burkett, Patrick R, Nyman, Jackson, Christian, Elena, Etminan, Yasaman, Lee, Annika, Stroh, Helene, Xia, Junrong, Karwacz, Katarzyna, Thakore, Pratiksha I, Acharya, Nandini, Schnell, Alexandra, Wang, Chao, Apetoh, Lionel, Rozenblatt-Rosen, Orit, Anderson, Ana C, Regev, Aviv, Kuchroo, Vijay K

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Small-Molecule RORγt Antagonists Inhibit T Helper 17 Cell Transcriptional Network by Divergent Mechanisms by Xiao, Sheng, Yosef, Nir, Yang, Jianfei, Wang, Yonghui, Zhou, Ling, Zhu, Chen, Wu, Chuan, Baloglu, Erkan, Schmidt, Darby, Ramesh, Radha, Lobera, Mercedes, Sundrud, Mark S., Tsai, Pei-Yun, Xiang, Zhijun, Wang, Jinsong, Xu, Yan, Lin, Xichen, Kretschmer, Karsten, Rahl, Peter B., Zhong, Zhong, Hafler, David A., Ghosh, Shomir, Marson, Alexander, Kuchroo, Vijay K., Regev, Aviv, Young, Richard A.

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