Combinatorial prediction of marker panels from single‐cell transcriptomic data 由 Regev, Aviv, Kuchroo, Vijay K, Singer, Meromit

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A Model for How Signal Duration Can Determine Distinct Outcomes of Gene Transcription Programs 由 Fowler, Kevin Daniel, Kuchroo, Vijay K., Chakraborty, Arup K.

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Induction of pathogenic TH17 cells by inducible salt-sensing kinase SGK1 由 Wu, Chuan, Yosef, Nir, Thalhamer, Theresa, Zhu, Chen, Xiao, Sheng, Kishi, Yasuhiro, Regev, Aviv, Kuchroo, Vijay K.

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RBPJ Controls Development of Pathogenic Th17 Cells by Regulating IL-23 Receptor Expression 由 Meyer zu Horste, Gerd, Wu, Chuan, Wang, Chao, Cong, Le, Pawlak, Mathias, Lee, Youjin, Elyaman, Wassim, Xiao, Sheng, Regev, Aviv, Kuchroo, Vijay K.

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Protein C receptor (PROCR) is a negative regulator of Th17 pathogenicity 由 Kishi, Yasuhiro, Kondo, Takaaki, Xiao, Sheng, Yosef, Nir, Gaublomme, Jellert, Wu, Chuan, Wang, Chao, Chihara, Norio, Regev, Aviv, Joller, Nicole, Kuchroo, Vijay K.

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Oct1 and OCA-B are selectively required for CD4 memory T cell function 由 Shakya, Arvind, Goren, Alon, Shalek, Alex, German, Cody N., Snook, Jeremy, Kuchroo, Vijay K., Yosef, Nir, Chan, Raymond C., Regev, Aviv, Williams, Matthew A., Tantin, Dean

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Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity 由 Gaublomme, Jellert T., Yosef, Nir, Lee, Youjin, Gertner, Rona S., Yang, Li V., Wu, Chuan, Pandolfi, Pier Paolo, Mak, Tak, Satija, Rahul, Kuchroo, Vijay K., Park, Hongkun, Regev, Aviv, Shalek, Alexander K

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Critical role of IRF1 and BATF in forming chromatin landscape during type 1 regulatory cell differentiation 由 Karwacz, Katarzyna, Miraldi, Emily R, Pokrovskii, Maria, Madi, Asaf, Yosef, Nir, Wortman, Ivo, Chen, Xi, Watters, Aaron, Carriero, Nicholas, Awasthi, Amit, Bonneau, Richard, Littman, Dan, Kuchroo, Vijay K, Regev, Aviv

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Induction and molecular signature of pathogenic T[subscript H]17 cells 由 Lee, Youjin, Awasthi, Amit, Yosef, Nir, Quintana, Francisco J., Xiao, Sheng, Peters, Anneli, Wu, Chuan, Kleinewietfeld, Markus, Kunder, Sharon, Hafler, David A., Sobel, Raymond A., Regev, Aviv, Kuchroo, Vijay K.

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T Follicular Regulatory Cell–Derived Fibrinogen-like Protein 2 Regulates Production of Autoantibodies and Induction of Systemic Autoimmunity 由 Sungnak, Waradon, Wagner, Allon, Kowalczyk, Monika S, Bod, Lloyd, Kye, Yoon-Chul, Sage, Peter T, Sharpe, Arlene H, Sobel, Raymond A, Quintana, Francisco J, Rozenblatt-Rosen, Orit, Regev, Aviv, Wang, Chao, Yosef, Nir, Kuchroo, Vijay K

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Tim-3 adapter protein Bat3 acts as an endogenous regulator of tolerogenic dendritic cell function 由 Tang, Ruihan, Acharya, Nandini, Subramanian, Ayshwarya, Purohit, Vinee, Tabaka, Marcin, Hou, Yu, He, Danyang, Dixon, Karen O, Lambden, Connor, Xia, Junrong, Rozenblatt-Rosen, Orit, Sobel, Raymond A, Wang, Chao, Regev, Aviv, Anderson, Ana C, Kuchroo, Vijay K

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Stem-like intestinal Th17 cells give rise to pathogenic effector T cells during autoimmunity 由 Schnell, Alexandra, Huang, Linglin, Singer, Meromit, Singaraju, Anvita, Barilla, Rocky M, Regan, Brianna ML, Bollhagen, Alina, Thakore, Pratiksha I, Dionne, Danielle, Delorey, Toni M, Pawlak, Mathias, Meyer zu Horste, Gerd, Rozenblatt-Rosen, Orit, Irizarry, Rafael A, Regev, Aviv, Kuchroo, Vijay K

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A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells 由 Singer, Meromit, Cong, Le, Kowalczyk, Monika S., Zhang, Huiyuan, Nyman, Jackson, Sakuishi, Kaori, Kurtulus, Sema, Gennert, David, Xia, Junrong, Kwon, John Y.H., Nevin, James, Herbst, Rebecca H., Yanai, Itai, Rozenblatt-Rosen, Orit, Kuchroo, Vijay K., Anderson, Ana C., Marjanovic, Nemanja, Regev, Aviv, Wang, Chao

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Calcitonin Gene-Related Peptide Negatively Regulates Alarmin-Driven Type 2 Innate Lymphoid Cell Responses 由 Wallrapp, Antonia, Burkett, Patrick R., Riesenfeld, Samantha J., Kim, Se-Jin, Christian, Elena, Abdulnour, Raja-Elie E., Thakore, Pratiksha I., Schnell, Alexandra, Lambden, Conner, Herbst, Rebecca H., Khan, Pavana, Tsujikawa, Kazutake, Xavier, Ramnik J., Chiu, Isaac M., Levy, Bruce D., Regev, Aviv, Kuchroo, Vijay K.

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Endogenous Glucocorticoid Signaling Regulates CD8+ T Cell Differentiation and Development of Dysfunction in the Tumor Microenvironment 由 Acharya, Nandini, Madi, Asaf, Zhang, Huiyuan, Klapholz, Max, Escobar, Giulia, Dulberg, Shai, Christian, Elena, Ferreira, Michelle, Dixon, Karen O, Fell, Geoffrey, Tooley, Katherine, Mangani, Davide, Xia, Junrong, Singer, Meromit, Bosenberg, Marcus, Neuberg, Donna, Rozenblatt-Rosen, Orit, Regev, Aviv, Kuchroo, Vijay K, Anderson, Ana C

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Transcriptional Atlas of Intestinal Immune Cells Reveals that Neuropeptide α-CGRP Modulates Group 2 Innate Lymphoid Cell Responses 由 Xu, Heping, Ding, Jiarui, Porter, Caroline, Wallrapp, Antonia, Tabaka, Marcin, Ma, Sai, Fu, Shujie, Guo, Xuanxuan, Riesenfeld, Samantha J., Su, Chienwen, Dionne, Danielle, Nguyen, Lan T., Lefkovith, Ariel, Ashenberg, Orr, Burkett, Patrick R., Shi, Hai Ning, Rozenblatt-Rosen, Orit, Graham, Daniel B., Kuchroo, Vijay K., Regev, Aviv, Xavier, Ramnik J.

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CD5L/AIM Regulates Lipid Biosynthesis and Restrains Th17 Cell Pathogenicity 由 Wang, Chao, Yosef, Nir, Gaublomme, Jellert, Wu, Chuan, Lee, Youjin, Clish, Clary B., Kaminski, Jim, Xiao, Sheng, Zu Horste, Gerd Meyer, Pawlak, Mathias, Kishi, Yasuhiro, Joller, Nicole, Karwacz, Katarzyna, Zhu, Chen, Ordovas-Montanes, Maria, Madi, Asaf, Wortman, Ivo, Miyazaki, Toru, Sobel, Raymond A., Park, Hongkun, Regev, Aviv, Kuchroo, Vijay K.

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Dynamic regulatory network controlling TH17 cell differentiation 由 Yosef, Nir, Shalek, Alex K., Gaublomme, Jellert T., Jin, Hulin, Lee, Youjin, Awasthi, Amit, Wu, Chuan, Karwacz, Katarzyna, Xiao, Sheng, Jorgolli, Marsela, Gennert, David, Satija, Rahul, Shakya, Arvind, Trombetta, John J., Pillai, Meenu R., Ratcliffe, Peter J., Coleman, Mathew L., Bix, Mark, Tantin, Dean, Park, Hongkun, Kuchroo, Vijay K., Regev, Aviv, Lu, Diana

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An IL-27-Driven Transcriptional Network Identifies Regulators of IL-10 Expression across T Helper Cell Subsets 由 Zhang, Huiyuan, Madi, Asaf, Yosef, Nir, Chihara, Norio, Awasthi, Amit, Pot, Caroline, Lambden, Conner, Srivastava, Amitabh, Burkett, Patrick R, Nyman, Jackson, Christian, Elena, Etminan, Yasaman, Lee, Annika, Stroh, Helene, Xia, Junrong, Karwacz, Katarzyna, Thakore, Pratiksha I, Acharya, Nandini, Schnell, Alexandra, Wang, Chao, Apetoh, Lionel, Rozenblatt-Rosen, Orit, Anderson, Ana C, Regev, Aviv, Kuchroo, Vijay K

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Small-Molecule RORγt Antagonists Inhibit T Helper 17 Cell Transcriptional Network by Divergent Mechanisms 由 Xiao, Sheng, Yosef, Nir, Yang, Jianfei, Wang, Yonghui, Zhou, Ling, Zhu, Chen, Wu, Chuan, Baloglu, Erkan, Schmidt, Darby, Ramesh, Radha, Lobera, Mercedes, Sundrud, Mark S., Tsai, Pei-Yun, Xiang, Zhijun, Wang, Jinsong, Xu, Yan, Lin, Xichen, Kretschmer, Karsten, Rahl, Peter B., Zhong, Zhong, Hafler, David A., Ghosh, Shomir, Marson, Alexander, Kuchroo, Vijay K., Regev, Aviv, Young, Richard A.

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