Purifying Selection against Pathogenic Mitochondrial DNA in Human T Cells by Walker, Melissa A, Lareau, Caleb A, Ludwig, Leif S, Karaa, Amel, Sankaran, Vijay G, Regev, Aviv, Mootha, Vamsi K

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Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin by Ma, Sai, Zhang, Bing, LaFave, Lindsay M, Earl, Andrew S, Chiang, Zachary, Hu, Yan, Ding, Jiarui, Brack, Alison, Kartha, Vinay K, Tay, Tristan, Law, Travis, Lareau, Caleb, Hsu, Ya-Chieh, Regev, Aviv, Buenrostro, Jason D

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JAK inhibition in a patient with a STAT1 gain-of-function variant reveals STAT1 dysregulation as a common feature of aplastic anemia by Rosenberg, Jacob M, Peters, Joshua M, Hughes, Travis, Lareau, Caleb A, Ludwig, Leif S, Massoth, Lucas R, Austin-Tse, Christina, Rehm, Heidi L, Bryson, Bryan, Chen, Yi-Bin, Regev, Aviv, Shalek, Alex K, Fortune, Sarah M, Sykes, David B

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Prioritizing disease and trait causal variants at the TNFAIP3 locus using functional and genomic features by Ray, John P, de Boer, Carl G, Fulco, Charles P, Lareau, Caleb A, Kanai, Masahiro, Ulirsch, Jacob C, Tewhey, Ryan, Ludwig, Leif S, Reilly, Steven K, Bergman, Drew T, Engreitz, Jesse M, Issner, Robbyn, Finucane, Hilary K, Lander, Eric S, Regev, Aviv, Hacohen, Nir

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Spatial genomics enables multi-modal study of clonal heterogeneity in tissues by Zhao, Tongtong, Chiang, Zachary D, Morriss, Julia W, LaFave, Lindsay M, Murray, Evan M, Del Priore, Isabella, Meli, Kevin, Lareau, Caleb A, Nadaf, Naeem M, Li, Jilong, Earl, Andrew S, Macosko, Evan Z, Jacks, Tyler, Buenrostro, Jason D, Chen, Fei

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Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma by LaFave, Lindsay M, Kartha, Vinay K, Ma, Sai, Meli, Kevin, Del Priore, Isabella, Lareau, Caleb, Naranjo, Santiago, Westcott, Peter MK, Duarte, Fabiana M, Sankar, Venkat, Chiang, Zachary, Brack, Alison, Law, Travis, Hauck, Haley, Okimoto, Annalisa, Regev, Aviv, Buenrostro, Jason D, Jacks, Tyler

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The SARS-CoV-2 RNA–protein interactome in infected human cells by Schmidt, Nora, Lareau, Caleb A., Keshishian, Hasmik, Ganskih, Sabina, Schneider, Cornelius, Hennig, Thomas, Melanson, Randy, Werner, Simone, Wei, Yuanjie, Zimmer, Matthias, Ade, Jens, Kirschner, Luisa, Zielinski, Sebastian, Dölken, Lars, Lander, Eric Steven, Caliskan, Neva, Fischer, Utz, Vogel, Jörg, Carr, Steven A., Bodem, Jochen, Munschauer, Mathias

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Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma by LaFave, Lindsay M., Kartha, Vinay K., Ma, Sai, Meli, Kevin, Del Priore, Isabella, Lareau, Caleb, Naranjo, Santiago, Westcott, Peter M.K., Duarte, Fabiana M., Sankar, Venkat, Chiang, Zachary, Brack, Alison, Law, Travis, Hauck, Haley, Okimoto, Annalisa, Regev, Aviv, Buenrostro, Jason D., Jacks, Tyler

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Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling by Lareau, Caleb A, Ludwig, Leif S, Muus, Christoph, Gohil, Satyen H, Zhao, Tongtong, Chiang, Zachary, Pelka, Karin, Verboon, Jeffrey M, Luo, Wendy, Christian, Elena, Rosebrock, Daniel, Getz, Gad, Boland, Genevieve M, Chen, Fei, Buenrostro, Jason D, Hacohen, Nir, Wu, Catherine J, Aryee, Martin J, Regev, Aviv, Sankaran, Vijay G

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Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations by Fulco, Charles P., Nasser, Joseph, Jones, Thouis R., Munson, Glen, Bergman, Drew T., Subramanian, Vidya, Grossman, Sharon Rachel, Anyoha, Rockwell, Doughty, Benjamin R., Patwardhan, Tejal A., Nguyen, Tung Hoang, Kane, Michael A., Perez, Elizabeth M., Durand, Neva C., Lareau, Caleb A., Stamenova, Elena K., Aiden, Erez Lieberman, Lander, Eric Steven, Engreitz, Jesse Michael

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Control of human hemoglobin switching by LIN28B-mediated regulation of BCL11A translation by Basak, Anindita, Munschauer, Mathias, Lareau, Caleb A., Montbleau, Kara E., Ulirsch, Jacob C., Hartigan, Christina R., Schenone, Monica, Lian, John, Wang, Yaomei, Huang, Yumin, Wu, Xianfang, Gehrke, Lee, Rice, Charles M., An, Xiuli, Christou, Helen A., Mohandas, Narla, Carr, Steven A., Chen, Jane-Jane, Orkin, Stuart H., Lander, Eric Steven, Sankaran, Vijay G.

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STAG2 loss reshapes oncogenic enhancer-promoter looping in Ewing sarcoma by Adane, Biniam, Alexe, Gabriela, Seong, Bo Kyung A., Lu, Diana, Hwang, Elizabeth E., Hnisz, Denes, Lareau, Caleb A., Ross, Linda, Lin, Shan, Dela Cruz, Filemon S., Richardson, Melissa, Weintraub, Abraham Selby, Wang, Sarah, Iniguez, Amanda Balboni, Dharia, Neekesh V., Conway, Amy Saur, Robichaud, Amanda L., Tanenbaum, Benjamin, Krill-Burger, John M., Vazquez, Francisca, Schenone, Monica, Berman, Jason N., Kung, Andrew L., Carr, Steven A., Aryee, Martin J., Young, Richard A., Crompton, Brian D., Stegmaier, Kimberly

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Gut CD4+ T cell phenotypes are a continuum molded by microbes, not by TH archetypes by Kiner, Evgeny, Willie, Elijah, Vijaykumar, Brinda, Chowdhary, Kaitavjeet, Schmutz, Hugo, Chandler, Jodie, Schnell, Alexandra, Thakore, Pratiksha I., LeGros, Graham, Mostafavi, Sara, Mathis, Diane, Benoist, Christophe, Aguilar, Oscar, Allan, Rhys, Astarita, Jilian, Austen, K. Frank, Barrett, Nora, Baysoy, Alev, Benoist, Christophe, Brown, Brian D., Buechler, Matthew, Buenrostro, Jason, Casanova, Maria Acebes, Choi, Kyunghee, Chowdhary, Kaitavjeet, Colonna, Marco, Crowl, Ty, Deng, Tianda, Desai, Jigar V., Desland, Fiona, Dhainaut, Maxime, Ding, Jiarui, Dominguez, Claudia, Dwyer, Daniel, Frascoli, Michela, Gal-Oz, Shani, Goldrath, Ananda, Grieshaber-Bouyer, Ricardo, Jia, Baosen, Johanson, Tim, Jordan, Stefan, Kang, Joonsoo, Kapoor, Varun, Kenigsberg, Ephraim, Kim, Joel, wook Kim, Ki, Kiner, Evgeny, Kronenberg, Mitchell, Lanier, Lewis, Laplace, Catherine, Lareau, Caleb, Leader, Andrew, Lee, Jisu, Magen, Assaf, Maier, Barbara, Maslova, Alexandra, Mathis, Diane, McFarland, Adelle, Merad, Miriam, Meunier, Etienne, Monach, Paul, Mostafavi, Sara, Muller, Soren, Muus, Christoph, Ner-Gaon, Hadas, Nguyen, Quyhn, Nigrovic, Peter A., Novakovsky, German, Nutt, Stephen, Omilusik, Kayla, Ortiz-Lopez, Adriana, Paynich, Mallory, Peng, Vincent, Potempa, Marc, Pradhan, Rachana, Quon, Sara, Ramirez, Ricardo, Ramanan, Deepshika, Randolph, Gwendalyn, Regev, Aviv, Rose, Samuel A., Seddu, Kumba, Shay, Tal, Shemesh, Avishai, Shyer, Justin, Smilie, Christopher, Spidale, Nick, Subramanian, Ayshwarya, Sylvia, Katelyn, Tellier, Julie, Turley, Shannon, Vijaykumar, Brinda, Wagers, Amy, Wang, Chendi, Wang, Peter L., Wroblewska, Aleksandra, Yang, Liang, Yim, Aldrin, Yoshida, Hideyuki

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