Liver Flukes and the Microbiota in Cancer by Lisa C. Osborne, Laura WegenerParfrey

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Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem by Stilianos Louca, Michael Doebeli, Laura Wegener Parfrey

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A census-based estimate of Earth's bacterial and archaeal diversity. by Stilianos Louca, Florent Mazel, Michael Doebeli, Laura Wegener Parfrey

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Alternative approaches to identify core bacteria in Fucus distichus microbiome and assess their distribution and host-specificity by Jungsoo Park, Katherine Davis, Geneviève Lajoie, Laura Wegener Parfrey

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Response to "Vast (but avoidable) underestimation of global biodiversity". by Stilianos Louca, Florent Mazel, Michael Doebeli, Laura Wegener Parfrey

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Blastocystis Colonization Alters the Gut Microbiome and, in Some Cases, Promotes Faster Recovery From Induced Colitis by Vincent Billy, Zuzana Lhotská, Zuzana Lhotská, Milan Jirků, Oldřiška Kadlecová, Lucia Frgelecová, Laura Wegener Parfrey, Laura Wegener Parfrey, Kateřina Jirků Pomajbíková, Kateřina Jirků Pomajbíková

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Are Human Intestinal Eukaryotes Beneficial or Commensals? by Julius Lukeš, Christen Rune Stensvold, Kateřina Jirků-Pomajbíková, Laura Wegener Parfrey

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Host-Specificity and Core Taxa of Seagrass Leaf Microbiome Identified Across Tissue Age and Geographical Regions by Rhea Sanders-Smith, Rhea Sanders-Smith, Bianca Trevizan Segovia, Bianca Trevizan Segovia, Coreen Forbes, Coreen Forbes, Margot Hessing-Lewis, Margot Hessing-Lewis, Evan Morien, Evan Morien, Matthew A. Lemay, Matthew A. Lemay, Mary I. O'Connor, Mary I. O'Connor, Laura Wegener Parfrey, Laura Wegener Parfrey, Laura Wegener Parfrey

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Vertebrate hosts as islands: dynamics of selection, immigration, loss, persistence and potential function of bacteria on salamander skin by Andrew Howard Loudon, Andrew Howard Loudon, Arvind eVenkataraman, William eVanTreuren, William eVanTreuren, Douglas eWoodhams, Douglas eWoodhams, Laura Wegener Parfrey, Laura Wegener Parfrey, Laura Wegener Parfrey, Valerie eMcKenzie, Rob eKnight, Rob eKnight, Rob eKnight, Thomas eSchmidt, Reid eHarris

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Is Host Filtering the Main Driver of Phylosymbiosis across the Tree of Life? by Florent Mazel, Katherine M. Davis, Andrew Loudon, Waldan K. Kwong, Mathieu Groussin, Laura Wegener Parfrey

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A benign helminth alters the host immune system and the gut microbiota in a rat model system. by Laura Wegener Parfrey, Milan Jirků, Radek Šíma, Marie Jalovecká, Bohumil Sak, Karina Grigore, Kateřina Jirků Pomajbíková

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Evaluating support for the current classification of eukaryotic diversity. by Laura Wegener Parfrey, Erika Barbero, Elyse Lasser, Micah Dunthorn, Debashish Bhattacharya, David J Patterson, Laura A Katz

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Defining the diversity of microbial eukaryotic communities in the mammalian gut within the context of environmental eukaryotic diversity by Laura Wegener Parfrey, Laura Wegener Parfrey, William Anton Walters, Christian L Lauber, Jose Carlos Clemente, Donna eBerg-Lyons, Julie M Brunelle, tilde eTeiling, Dilip Chinnappa Kodira, Mohammed eMohiuddin, Mohammed eMohiuddin, Mark eDriscoll, Mark eDriscoll, Mark eDriscoll, Noah eFierer, Jack A Gilbert, Rob eKnight, Rob eKnight

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A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease. by Maomeng Tong, Xiaoxiao Li, Laura Wegener Parfrey, Bennett Roth, Andrew Ippoliti, Bo Wei, James Borneman, Dermot P B McGovern, Daniel N Frank, Ellen Li, Steve Horvath, Rob Knight, Jonathan Braun

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EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution. by Javier Del Campo, Martin Kolisko, Vittorio Boscaro, Luciana F Santoferrara, Serafim Nenarokov, Ramon Massana, Laure Guillou, Alastair Simpson, Cedric Berney, Colomban de Vargas, Matthew W Brown, Patrick J Keeling, Laura Wegener Parfrey

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Deconstructing the Bat Skin Microbiome: Influences of the Host and the Environment by Christine V Avena, Laura Wegener Parfrey, Jonathan W Leff, Jonathan W Leff, Holly M Archer, Winifred F. Frick, Kate E. Langwig, Kate E. Langwig, A. Marm Kilpatrick, Karen E. Powers, Jeffrey T. Foster, Valerie McKenzie

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A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system by Jessica L Metcalf, Laura Wegener Parfrey, Antonio Gonzalez, Christian L Lauber, Dan Knights, Gail Ackermann, Gregory C Humphrey, Matthew J Gebert, Will Van Treuren, Donna Berg-Lyons, Kyle Keepers, Yan Guo, James Bullard, Noah Fierer, David O Carter, Rob Knight

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Identifying the etiology and pathophysiology underlying stunting and environmental enteropathy: study protocol of the AFRIBIOTA project by Pascale Vonaesch, Rindra Randremanana, Jean-Chrysostome Gody, Jean-Marc Collard, Tamara Giles-Vernick, Maria Doria, Inès Vigan-Womas, Pierre-Alain Rubbo, Aurélie Etienne, Emilson Jean Andriatahirintsoa, Nathalie Kapel, Eric Brown, Kelsey E. Huus, Darragh Duffy, B.Brett Finlay, Milena Hasan, Francis Allen Hunald, Annick Robinson, Alexandre Manirakiza, Laura Wegener-Parfrey, Muriel Vray, Philippe J. Sansonetti, for the AFRIBIOTA Investigators

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Changes in Systemic Regulatory T Cells, Effector T Cells, and Monocyte Populations Associated With Early-Life Stunting by Zo Andriamanantena, Fanirisoa Randrianarisaona, Maheninasy Rakotondrainipiana, Prisca Andriantsalama, Ravaka Randriamparany, Rindra Randremanana, Frédérique Randrianirina, Sophie Novault, Darragh Duffy, François Huetz, Milena Hasan, Matthieu Schoenhals, Philippe J. Sansonetti, Pascale Vonaesch, Inès Vigan-Womas, Afribiota Investigators, Laurence Barbot-Trystram, Robert Barouki, Alexandra Bastaraud, Jean-Marc Collard, Maria Doria, Darragh Duffy, Serge Ghislain Djorie, Tamara Giles-Vernick, Bolmbaye Privat Gondje, Jean-Chrysostome Gody, Milena Hasan, Jean-Michel Héraud, Francis Allan Hunald, Nathalie Kapel, Jean-Pierre Lombart, Alexandre Manirakiza, Synthia Nazita Nigatoloum, Laura Wegener Parfrey, Lisette Raharimalala, Maheninasy Rakotondrainipiana, Rindra Vatosoa Randremanana, Harifetra Mamy Richard Randriamizao, Frédérique Randrianirina, Annick Lalaina Robinson, Pierre-Alain Rubbo, Philippe Sansonetti, Laura Schaeffer, Ionela Gouandjika-Vassilache, Pascale Vonaesch, Sonia Sandrine Vondo, Inès Vigan-Womas

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