Impact of the Respiratory Microbiome on Host Responses to Respiratory Viral Infection by Maxime Pichon, Bruno Lina, Laurence Josset

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Simultaneous co-infection with Omicron (B.1.1.529) and Delta (21A/478K.V1) SARS-CoV-2 variants confirmed by whole genome sequencing by Souheil Zayet, Jean-Baptiste Vuillemenot, Laurence Josset, Vincent Gendrin, Timothée Klopfenstein

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Systematic SARS-CoV-2 screening in cerebrospinal fluid during the COVID-19 pandemic by Grégory Destras, Antonin Bal, Vanessa Escuret, Florence Morfin, Bruno Lina, Laurence Josset

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Transcriptomic Characterization of the Novel Avian-Origin Influenza A (H7N9) Virus: Specific Host Response and Responses Intermediate between Avian (H5N1 and H7N7) and Human (H3N2)... by Laurence Josset, Hui Zeng, Sara M. Kelly, Terrence M. Tumpey, Michael G. Katze

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Whole Genome Sequencing of A(H3N2) Influenza Viruses Reveals Variants Associated with Severity during the 2016–2017 Season by Bruno Simon, Maxime Pichon, Martine Valette, Gwendolyne Burfin, Mathilde Richard, Bruno Lina, Laurence Josset

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Long-term humoral response following Delta and Omicron BA.1 co-infection by Carla Saade, Bruno Pozzetto, Melyssa Yaugel-Novoa, Guy Oriol, Laurence Josset, Bruno Lina, Stéphane Paul, Antonin Bal, Sophie Trouillet-Assant

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Gene expression signature-based screening identifies new broadly effective influenza a antivirals. by Laurence Josset, Julien Textoris, Béatrice Loriod, Olivier Ferraris, Vincent Moules, Bruno Lina, Catherine N'guyen, Jean-Jacques Diaz, Manuel Rosa-Calatrava

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Metagenomic Investigation of Torque Teno Mini Virus-SH in Hematological Patients by Antonin Bal, Antonin Bal, Antonin Bal, Guy Oriol, Laurence Josset, Laurence Josset, Laurence Generenaz, Clémentine Sarkozy, Pierre Sesques, Gilles Salles, Florence Morfin, Florence Morfin, Bruno Lina, Bruno Lina, Jérémie Becker, Frédéric Reynier, François Mallet, Alexandre Pachot, Valérie Cheynet, Karen Brengel-Pesce, Sophie Trouillet-Assant, Sophie Trouillet-Assant

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Metagenomic Analysis Reveals High Abundance of Torque Teno Mini Virus in the Respiratory Tract of Children with Acute Respiratory Illness by Antonin Bal, Gregory Destras, Marina Sabatier, Maxime Pichon, Hadrien Regue, Guy Oriol, Yves Gillet, Bruno Lina, Karen Brengel-Pesce, Laurence Josset, Florence Morfin

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Comparison of Nucleic Acid Extraction Methods for a Viral Metagenomics Analysis of Respiratory Viruses by Marina Sabatier, Antonin Bal, Grégory Destras, Hadrien Regue, Grégory Quéromès, Valérie Cheynet, Bruno Lina, Claire Bardel, Karen Brengel-Pesce, Vincent Navratil, Laurence Josset

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Bamlanivimab as monotherapy in two immunocompromised patients with COVID-19 by Grégory Destras, Souad Assaad, Antonin Bal, Maude Bouscambert-Duchamp, Virginie Avrillon, Bruno Simon, Martine Valette, Jean-Yves Blay, Bruno Lina, Emilie Frobert, Laurence Josset

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SARS-CoV-2 Omicron Variant, Lineage BA.1, Is Associated with Lower Viral Load in Nasopharyngeal Samples Compared to Delta Variant by Célia Sentis, Geneviève Billaud, Antonin Bal, Emilie Frobert, Maude Bouscambert, Gregory Destras, Laurence Josset, Bruno Lina, Florence Morfin, Alexandre Gaymard, the COVID-Diagnosis HCL Study Group

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Cell Host Response to Infection with Novel Human Coronavirus EMC Predicts Potential Antivirals and Important Differences with SARS Coronavirus by Laurence Josset, Vineet D. Menachery, Lisa E. Gralinski, Sudhakar Agnihothram, Pavel Sova, Victoria S. Carter, Boyd L. Yount, Rachel L. Graham, Ralph S. Baric, Michael G. Katze

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Detection and prevalence of SARS-CoV-2 co-infections during the Omicron variant circulation in France by Antonin Bal, Bruno Simon, Gregory Destras, Richard Chalvignac, Quentin Semanas, Antoine Oblette, Grégory Quéromès, Remi Fanget, Hadrien Regue, Florence Morfin, Martine Valette, Bruno Lina, Laurence Josset

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Co-infection with Legionella and SARS-CoV-2, France, March 2020 by Camille Allam, Alexandre Gaymard, Ghislaine Descours, Christophe Ginevra, Laurence Josset, Maud Bouscambert, Laetitia Beraud, Marine Ibranosyan, Camille Golfier, Arnaud Friggeri, Bruno Lina, Christine Campèse, Florence Ader, Sophie Jarraud

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Evaluation of EPISEQ SARS-CoV-2 and a Fully Integrated Application to Identify SARS-CoV-2 Variants from Several Next-Generation Sequencing Approaches by Nathalie Mugnier, Aurélien Griffon, Bruno Simon, Maxence Rambaud, Hadrien Regue, Antonin Bal, Gregory Destras, Maud Tournoud, Magali Jaillard, Abel Betraoui, Emmanuelle Santiago, Valérie Cheynet, Alexandre Vignola, Véronique Ligeon, Laurence Josset, Karen Brengel-Pesce

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Metagenomic Next-Generation Sequencing Reveals Individual Composition and Dynamics of Anelloviruses during Autologous Stem Cell Transplant Recipient Management by Antonin Bal, Clémentine Sarkozy, Laurence Josset, Valérie Cheynet, Guy Oriol, Jérémie Becker, Gaëlle Vilchez, Pierre Sesques, François Mallet, Alexandre Pachot, Florence Morfin, Bruno Lina, Gilles Salles, Fréderic Reynier, Sophie Trouillet-Assant, Karen Brengel-Pesce

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Novel SARS-CoV-2 Variant Derived from Clade 19B, France by Slim Fourati, Jean-Winoc Decousser, Souraya Khouider, Melissa N’Debi, Vanessa Demontant, Elisabeth Trawinski, Aurélie Gourgeon, Christine Gangloff, Grégory Destras, Antonin Bal, Laurence Josset, Alexandre Soulier, Yannick Costa, Guillaume Gricourt, Bruno Lina, Raphaël Lepeule, Jean-Michel Pawlotsky, Christophe Rodriguez

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The Role of Lebanon in the COVID-19 Butterfly Effect: The B.1.398 Example by Dalal Nour, Rayane Rafei, Alessandra P. Lamarca, Luiz G. P. de Almeida, Marwan Osman, Mohamad Bachar Ismail, Hassan Mallat, Atika Berry, Gwendolyne Burfin, Quentin Semanas, Laurence Josset, Hamad Hassan, Fouad Dabboussi, Bruno Lina, Philippe Colson, Ana Tereza R. Vasconcelos, Monzer Hamze

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Dynamics of viral shedding during ancestral or Omicron BA.1 SARS-CoV-2 infection and enhancement of pre-existing immunity during breakthrough infections by Carla Saade, Karen Brengel-Pesce, Alexandre Gaymard, Mary-Anne Trabaud, Gregory Destras, Guy Oriol, Valérie Cheynet, Marion Debombourg, Bouchra Mokdad, Geneviève Billaud, Antoine Oblette, Hervé Créhalet, Jean-Marc Giannoli, Christine Garrigou, Laurence Generenaz, Christelle Compagnon, André Boibieux, Bruno Lina, Florence Morfin, Bruno Pozzetto, Laurence Josset, Sophie Touillet-Assant, Antonin Bal

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