SARS-CoV-2 Variants Identification: Overview of Molecular Existing Methods by Giulia Berno, Lavinia Fabeni, Giulia Matusali, Cesare Ernesto Maria Gruber, Martina Rueca, Emanuela Giombini, Anna Rosa Garbuglia

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Rapid and qualitative identification of SARS-CoV-2 mutations associated with variants of concern using a multiplex RT-PCR assay coupled with melting analysis by Giuseppe Sberna, Lavinia Fabeni, Giulia Berno, Fabrizio Carletti, Eliana Specchiarello, Francesca Colavita, Silvia Meschi, Giulia Matusali, Anna Rosa Garbuglia, Licia Bordi, Eleonora Lalle

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Detection of SARS-CoV-2 Variants via Different Diagnostics Assays Based on Single-Nucleotide Polymorphism Analysis by Eliana Specchiarello, Giulia Matusali, Fabrizio Carletti, Cesare Ernesto Maria Gruber, Lavinia Fabeni, Claudia Minosse, Emanuela Giombini, Martina Rueca, Fabrizio Maggi, Alessandra Amendola, Anna Rosa Garbuglia

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Comparison of SARS-CoV-2 Detection in Nasopharyngeal Swab and Saliva Samples from Patients Infected with Omicron Variant by Licia Bordi, Giuseppe Sberna, Eleonora Lalle, Lavinia Fabeni, Valentina Mazzotta, Simone Lanini, Angela Corpolongo, Anna Rosa Garbuglia, Emanuele Nicastri, Enrico Girardi, Francesco Vaia, Andrea Antinori, Fabrizio Maggi

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High rates of chronic HBV genotype E infection in a group of migrants in Italy from West Africa: Virological characteristics associated with poor immune clearance. by Vincenzo Malagnino, Romina Salpini, Gaetano Maffongelli, Arianna Battisti, Lavinia Fabeni, Lorenzo Piermatteo, Luna Colagrossi, Vanessa Fini, Alessandra Ricciardi, Cesare Sarrecchia, Carlo Federico Perno, Massimo Andreoni, Valentina Svicher, Loredana Sarmati

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HIV-1 Gag gene mutations, treatment response and drug resistance to protease inhibitors: A systematic review and meta-analysis protocol. by Alex Durand Nka, Georges Teto, Maria Mercedes Santoro, Valantine Ngum Ndze, Désiré Takou, Beatrice Dambaya, Ezechiel Ngoufack Jagni Semengue, Lavinia Fabeni, Carlo-Federico Perno, Vittorio Colizzi, Francesca Ceccherini-Silberstein, Joseph Fokam

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Evaluation of HIV Transmission Clusters among Natives and Foreigners Living in Italy by Lavinia Fabeni, Maria Mercedes Santoro, Patrizia Lorenzini, Stefano Rusconi, Nicola Gianotti, Andrea Costantini, Loredana Sarmati, Andrea Antinori, Francesca Ceccherini-Silberstein, Antonella d’Arminio Monforte, Annalisa Saracino, Enrico Girardi, on behalf of the Icona Foundation Study Cohort

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Lower prevalence of Blastocystis sp. infections in HIV positive compared to HIV negative adults in Ghana. by Veronica Di Cristanziano, Rossella D'Alfonso, Federica Berrilli, Fred Stephen Sarfo, Maristella Santoro, Lavinia Fabeni, Elena Knops, Eva Heger, Rolf Kaiser, Albert Dompreh, Richard Odame Phillips, Betty Norman, Torsten Feldt, Kirsten Alexandra Eberhardt

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Correction: Lower prevalence of Blastocystis sp. infections in HIV positive compared to HIV negative adults in Ghana. by Veronica Di Cristanziano, Rossella D Alfonso, Federica Berrilli, Fred Stephen Sarfo, Maristella Santoro, Lavinia Fabeni, Elena Knops, Eva Heger, Rolf Kaiser, Albert Dompreh, Richard Odame Phillips, Betty Norman, Torsten Feldt, Kirsten Alexandra Eberhardt

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HIV-1 integrase resistance associated mutations and the use of dolutegravir in Sub-Saharan Africa: a systematic review and meta-analysis protocol by Ezechiel Ngoufack Jagni Semengue, Maria Mercedes Santoro, Valantine Ngum Ndze, Beatrice Dambaya, Desiré Takou, Georges Teto, Alex Durand Nka, Lavinia Fabeni, Alison Wiyeh, Francesca Ceccherini-Silberstein, Vittorio Colizzi, Carlo-Federico Perno, Joseph Fokam

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Long-acting combination of cabotegravir plus rilpivirine: A picture of potential eligible and ineligible HIV-positive individuals from the Italian ARCA cohort by Adriana Cervo, Antonio Russo, Domenico Di Carlo, Andrea De Vito, Lavinia Fabeni, Stefano D'Anna, Leonardo Duca, Agnese Colpani, Marco Fois, Beatrice Zauli, Giulia Mancarella, Anna Carraro, Antonia Bezenchek, Alessandro Cozzi-Lepri, Maria Mercedes Santoro

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Molecular Transmission Dynamics of Primary HIV Infections in Lazio Region, Years 2013–2020 by Lavinia Fabeni, Gabriella Rozera, Giulia Berno, Emanuela Giombini, Caterina Gori, Nicoletta Orchi, Gabriella De Carli, Silvia Pittalis, Vincenzo Puro, Carmela Pinnetti, Annalisa Mondi, Marta Camici, Maria Maddalena Plazzi, Andrea Antinori, Maria Rosaria Capobianchi, Isabella Abbate

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HIV-1 integrase resistance associated mutations and the use of dolutegravir in Sub-Saharan Africa: A systematic review and meta-analysis by Ezechiel Ngoufack Jagni Semengue, Maria Mercedes Santoro, Valantine Ngum Ndze, Aude Christelle Ka’e, Bouba Yagai, Alex Durand Nka, Beatrice Dambaya, Desiré Takou, Georges Teto, Lavinia Fabeni, Vittorio Colizzi, Carlo-Federico Perno, Francesca Ceccherini-Silberstein, Joseph Fokam

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HIV-1 integrase resistance associated mutations and the use of dolutegravir in Sub-Saharan Africa: A systematic review and meta-analysis. by Ezechiel Ngoufack Jagni Semengue, Maria Mercedes Santoro, Valantine Ngum Ndze, Aude Christelle Ka'e, Bouba Yagai, Alex Durand Nka, Beatrice Dambaya, Desiré Takou, Georges Teto, Lavinia Fabeni, Vittorio Colizzi, Carlo-Federico Perno, Francesca Ceccherini-Silberstein, Joseph Fokam

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Genomic and Epidemiologic Surveillance of SARS-CoV-2 in the Pandemic Period: Sequencing Network of the Lazio Region, Italy by Martina Rueca, Giulia Berno, Alessandro Agresta, Martina Spaziante, Cesare Ernesto Maria Gruber, Lavinia Fabeni, Emanuela Giombini, Ornella Butera, Alessandra Barca, Paola Scognamiglio, Enrico Girardi, Fabrizio Maggi, Maria Beatrice Valli, Francesco Vairo, SARS-CoV-2 Lazio Genomic Surveillance Study Group

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Treatment-Emergent Cilgavimab Resistance Was Uncommon in Vaccinated Omicron BA.4/5 Outpatients by Cesare Ernesto Maria Gruber, Fabio Giovanni Tucci, Martina Rueca, Valentina Mazzotta, Giulia Gramigna, Alessandra Vergori, Lavinia Fabeni, Giulia Berno, Emanuela Giombini, Ornella Butera, Daniele Focosi, Ingrid Guarnetti Prandi, Giovanni Chillemi, Emanuele Nicastri, Francesco Vaia, Enrico Girardi, Andrea Antinori, Fabrizio Maggi

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The genotypic false positive rate determined by V3 population sequencing can predict the burden of HIV-1 CXCR4-using species detected by pyrosequencing. by Valentina Svicher, Valeria Cento, Gabriella Rozera, Isabella Abbate, Maria Mercedes Santoro, Daniele Armenia, Lavinia Fabeni, Alessandro Bruselles, Alessandra Latini, Guido Palamara, Valeria Micheli, Giuliano Rizzardini, Caterina Gori, Federica Forbici, Giuseppe Ippolito, Massimo Andreoni, Andrea Antinori, Francesca Ceccherini-Silberstein, Maria Rosaria Capobianchi, Carlo Federico Perno

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A very low geno2pheno false positive rate is associated with poor viro-immunological response in drug-naïve patients starting a first-line HAART. by Daniele Armenia, Cathia Soulie, Domenico Di Carlo, Lavinia Fabeni, Caterina Gori, Federica Forbici, Valentina Svicher, Ada Bertoli, Loredana Sarmati, Massimo Giuliani, Alessandra Latini, Evangelo Boumis, Mauro Zaccarelli, Rita Bellagamba, Massimo Andreoni, Anne-Geneviève Marcelin, Vincent Calvez, Andrea Antinori, Francesca Ceccherini-Silberstein, Carlo-Federico Perno, Maria Mercedes Santoro

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Molecular Characterization of Whole-Genome SARS-CoV-2 from the First Suspected Cases of the XE Variant in the Lazio Region, Italy by Martina Rueca, Emanuela Giombini, Giulia Gramigna, Cesare Ernesto Maria Gruber, Lavinia Fabeni, Angela Corpolongo, Valentina Mazzotta, Luisella Corso, Ornella Butera, Maria Beatrice Valli, Fabrizio Carletti, Stefano Pignalosa, Francesco Vairo, Emanuele Nicastri, Andrea Antinori, Enrico Girardi, Francesco Vaia, Fabrizio Maggi, SARS CoV-2 Lazio Surveillance Study Group

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NS5A Gene Analysis by Next Generation Sequencing in HCV Nosocomial Transmission Clusters of HCV Genotype 1b Infected Patients by Maria Concetta Bellocchi, Marianna Aragri, Luca Carioti, Lavinia Fabeni, Rosaria Maria Pipitone, Giuseppina Brancaccio, Maria Chiara Sorbo, Silvia Barbaliscia, Velia Chiara Di Maio, Fabrizio Bronte, Stefania Grimaudo, Walter Mazzucco, Ferdinando Frigeri, Marco Cantone, Antonio Pinto, Carlo Federico Perno, Antonio Craxì, Giovanni Battista Gaeta, Vito Di Marco, Francesca Ceccherini-Silberstein

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