Recent approaches in computational modelling for controlling pathogen threats по Lees, JA, Russell, TW, Shaw, LP, Hellewell, J

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study по Lees, JA, Kendall, M, Parkhill, J, Colijn, C, Bentley, SD, Harris, SR

Genome-wide epistasis and co-selection study using mutual information по Pensar, J, Puranen, S, Arnold, B, MacAlasdair, N, Kuronen, J, Tonkin-Hill, G, Pesonen, M, Xu, Y, Sipola, A, Sanchez-Buso, L, Lees, JA, Chewapreecha, C, Bentley, SD, Harris, SR, Parkhill, J, Croucher, NJ, Corander, J

International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact по Gladstone, RA, Lo, SW, Lees, JA, Croucher, NJ, Van Tonder, AJ, Corander, J, Page, AJ, Marttinen, P, Bentley, LJ, Ochoa, TJ, Ho, PL, Du Plessis, M, Cornick, JE, Kwambana-Adams, B, Benisty, R, Nzenze, SA, Madhi, SA, Hawkins, PA, Everett, DB, Antonio, M, Dagan, R, Klugman, KP, Von Gottberg, A, McGee, L, Breiman, RF, Bentley, SD, Turner, P

Key epidemiological drivers and impact of interventions in the 2020 SARS-CoV-2 epidemic in England по Knock, ES, Whittles, LK, Lees, JA, Perez-Guzman, PN, Verity, R, FitzJohn, RG, Gaythorpe, KAM, Imai, N, Hisley, W, Okell, LC, Rosello, A, Kantas, N, Walters, CE, Bhatia, S, Watson, OJ, Whittaker, C, Cattarino, L, Boonyasin, A, Djaafara, BA, Fraser, K, Fu, H, Wang, H, Xi, X, Donnelly, CA, Jauneikaite, E, Laydon, DJ, White, PJ, Ghani, AC, Ferguson, NM, Cori, A, Baguelin, M

Atlas of group A streptococcal vaccine candidates compiled using large scale comparative genomics по Davies, MR, McIntyre, L, Mutreja, A, Lacey, JA, Lees, JA, Towers, RJ, Duchene, S, Smeesters, PR, Frost, HR, Price, DJ, Holden, MTG, David, S, Giffard, PM, Worthing, KA, Seale, AC, Berkley, JA, Harris, SR, Rivera-Hernandez, T, Berking, O, Cork, AJ, Torres, RSLA, Lithgow, T, Strugnell, RA, Bergmann, R, Nitsche-Schmitz, P, Chhatwal, GS, Bentley, SD, Fraser, JD, Moreland, NJ, Carapetis, JR, Steer, AC, Parkhill, J, Saul, A, Williamson, DA, Currie, BJ, Tong, SY, Dougan, G, Walker, MJ

Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates по Gladstone, RA, Lo, SW, Goater, R, Yeats, C, Taylor, B, Hadfield, J, Lees, JA, Croucher, NJ, van Tonder, AJ, Bentley, LJ, Quah, FX, Blaschke, AJ, Pershing, NL, Byington, CL, Balaji, V, Hryniewicz, W, Sigauque, B, Ravikumar, KL, Almeida, SCG, Ochoa, TJ, Ho, PL, du Plessis, M, Ndlangisa, KM, Cornick, JE, Kwambana-Adams, B, Benisty, R, Nzenze, SA, Madhi, SA, Hawkins, PA, Pollard, AJ, Everett, DB, Antonio, M, Dagan, R, Klugman, KP, von Gottberg, A, Metcalf, BJ, Li, Y, Beall, BW, McGee, L, Breiman, RF, Aanensen, DM, Bentley, SD, The Global Pneumococcal Sequencing Consortium

Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome... по Lo, SW, Gladstone, RA, van Tonder, AJ, Lees, JA, du Plessis, M, Benisty, R, Givon-Lavi, N, Hawkins, PA, Cornick, JE, Kwambana-Adams, B, Law, PY, Ho, PL, Antonio, M, Everett, DB, Dagan, R, Von Gottberg, A, Klugman, KP, McGee, L, Breiman, RF, Bentley, SD, Brooks, AW, Corso, A, Davydov, A, Maguire, A, Pollard, A, Kiran, A, Skoczynska, A, Moiane, B, Beall, B, Sigauque, B, Aanensen, D, Lehmann, D, Faccone, D, Foster-Nyarko, E, Bojang, E, Egorova, E, Voropaeva, E, Sampane-Donkor, E, Sadowy, E, Bigogo, G, Mucavele, H, Belabbès, H, Diawara, I, Moïsi, J, Verani, J, Keenan, J, Bhai, JN, Ndlangisa, KM, Zerouali, K, Ravikumar, KL, Titov, L, De Gouveia, L, Alaerts, M, Ip, M, de Cunto Brandileone, MC, Hasanuzzaman, M, Paragi, M, Nurse-Lucas, M, Ali, M, Elmdaghri, N, Croucher, N, Wolter, N, Porat, N, Eser, Ö, Akpaka, PE, Turner, P, Gagetti, P, Tientcheu, P-E, Carter, PE, Mostowy, R, Kandasamy, R, Ford, R, Henderson, R, Malaker, R, Shakoor, S, Almeida, SC, Saha, SK, Doiphode, S, Madhi, SA, Sekaran, S, Srifuengfung, S, Obaro, S, Clarke, SC, Nzenze, SA, Kastrin, T, Ochoa, TJ, Balaji, V, Hryniewicz, W, Urban, Y