HetEnc: a deep learning predictive model for multi-type biological dataset by Leihong Wu, Xiangwen Liu, Joshua Xu

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Enhancing Bias Assessment for Complex Term Groups in Language Embedding Models: Quantitative Comparison of Methods by Magnus Gray, Mariofanna Milanova, Leihong Wu

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BERT-Based Natural Language Processing of Drug Labeling Documents: A Case Study for Classifying Drug-Induced Liver Injury Risk by Yue Wu, Zhichao Liu, Leihong Wu, Minjun Chen, Weida Tong

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Does applicability domain exist in microarray-based genomic research? by Li Shao, Leihong Wu, Hong Fang, Weida Tong, Xiaohui Fan

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Enhanced QSAR Model Performance by Integrating Structural and Gene Expression Information by Xiaohui Fan, Li Xing, Wei Liu, Leihong Wu, Qian Chen

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Comprehensive Assessments of RNA-seq by the SEQC Consortium: FDA-Led Efforts Advance Precision Medicine by Joshua Xu, Binsheng Gong, Leihong Wu, Shraddha Thakkar, Huixiao Hong, Weida Tong

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Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine by Wenming Xiao, Leihong Wu, Gokhan Yavas, Vahan Simonyan, Baitang Ning, Huixiao Hong

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DLI-IT: a deep learning approach to drug label identification through image and text embedding by Xiangwen Liu, Joe Meehan, Weida Tong, Leihong Wu, Xiaowei Xu, Joshua Xu

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Optimized imaging methods for species-level identification of food-contaminating beetles by Tanmay Bera, Leihong Wu, Hongjian Ding, Howard Semey, Amy Barnes, Zhichao Liu, Himansu Vyas, Weida Tong, Joshua Xu

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Shifting from population-wide to personalized cancer prognosis with microarrays. by Li Shao, Xiaohui Fan, Ningtao Cheng, Leihong Wu, Haoshu Xiong, Hong Fang, Don Ding, Leming Shi, Yiyu Cheng, Weida Tong

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Technical advance in targeted NGS analysis enables identification of lung cancer risk-associated low frequency TP53, PIK3CA, and BRAF mutations in airway epithelial cells by Daniel J. Craig, Thomas Morrison, Sadik A. Khuder, Erin L. Crawford, Leihong Wu, Joshua Xu, Thomas M. Blomquist, James C. Willey

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Assessing the performance of large language models in literature screening for pharmacovigilance: a comparative study by Dan Li, Leihong Wu, Mingfeng Zhang, Svitlana Shpyleva, Ying-Chi Lin, Ying-Chi Lin, Ho-Yin Huang, Ho-Yin Huang, Ting Li, Joshua Xu

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Study of serious adverse drug reactions using FDA-approved drug labeling and MedDRA by Leihong Wu, Taylor Ingle, Zhichao Liu, Anna Zhao-Wong, Stephen Harris, Shraddha Thakkar, Guangxu Zhou, Junshuang Yang, Joshua Xu, Darshan Mehta, Weigong Ge, Weida Tong, Hong Fang

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Novel reference genes in colorectal cancer identify a distinct subset of high stage tumors and their associated histologically normal colonic tissues by Lai Xu, Helen Luo, Rong Wang, Wells W. Wu, Je-Nie Phue, Rong-Fong Shen, Hartmut Juhl, Leihong Wu, Wei-lun Alterovitz, Vahan Simonyan, Lorraine Pelosof, Amy S. Rosenberg

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Accurate species identification of food-contaminating beetles with quality-improved elytral images and deep learning by Halil Bisgin, Tanmay Bera, Leihong Wu, Hongjian Ding, Neslihan Bisgin, Zhichao Liu, Monica Pava-Ripoll, Amy Barnes, James F. Campbell, Himansi Vyas, Cesare Furlanello, Weida Tong, Joshua Xu

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Enhancing pharmacogenomic data accessibility and drug safety with large language models: a case study with Llama3.1 by Dan Li, Leihong Wu, Ying-Chi Lin, Ying-Chi Lin, Ho-Yin Huang, Ho-Yin Huang, Ebony Cotton, Qi Liu, Ru Chen, Ruihao Huang, Yifan Zhang, Joshua Xu

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A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency by Wendell Jones, Binsheng Gong, Natalia Novoradovskaya, Dan Li, Rebecca Kusko, Todd A. Richmond, Donald J. Johann, Halil Bisgin, Sayed Mohammad Ebrahim Sahraeian, Pierre R. Bushel, Mehdi Pirooznia, Katherine Wilkins, Marco Chierici, Wenjun Bao, Lee Scott Basehore, Anne Bergstrom Lucas, Daniel Burgess, Daniel J. Butler, Simon Cawley, Chia-Jung Chang, Guangchun Chen, Tao Chen, Yun-Ching Chen, Daniel J. Craig, Angela del Pozo, Jonathan Foox, Margherita Francescatto, Yutao Fu, Cesare Furlanello, Kristina Giorda, Kira P. Grist, Meijian Guan, Yingyi Hao, Scott Happe, Gunjan Hariani, Nathan Haseley, Jeff Jasper, Giuseppe Jurman, David Philip Kreil, Paweł Łabaj, Kevin Lai, Jianying Li, Quan-Zhen Li, Yulong Li, Zhiguang Li, Zhichao Liu, Mario Solís López, Kelci Miclaus, Raymond Miller, Vinay K. Mittal, Marghoob Mohiyuddin, Carlos Pabón-Peña, Barbara L. Parsons, Fujun Qiu, Andreas Scherer, Tieliu Shi, Suzy Stiegelmeyer, Chen Suo, Nikola Tom, Dong Wang, Zhining Wen, Leihong Wu, Wenzhong Xiao, Chang Xu, Ying Yu, Jiyang Zhang, Yifan Zhang, Zhihong Zhang, Yuanting Zheng, Christopher E. Mason, James C. Willey, Weida Tong, Leming Shi, Joshua Xu

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