Luay Nakhleh

Luay K. Nakhleh (Arabic: لؤي نخله; born May 8, 1974) is a Palestinian-Israeli-American computer scientist and computational biologist. He is the William and Stephanie Sick Dean of the George R. Brown School of Engineering at Rice University. Nakhleh's research is on computational and statistical approaches to phylogenomics and comparative genomics. Provided by Wikipedia
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  1. 1
    Species tree inference by minimizing deep coalescences.

    Species tree inference by minimizing deep coalescences. by Cuong Than, Luay Nakhleh

    Published 2009-09-01
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  2. 2
    An Evaluation of Methods for Inferring Boolean Networks from Time-Series Data.

    An Evaluation of Methods for Inferring Boolean Networks from Time-Series Data. by Natalie Berestovsky, Luay Nakhleh

    Published 2013-01-01
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  3. 3
    Exploring phylogenetic hypotheses via Gibbs sampling on evolutionary networks

    Exploring phylogenetic hypotheses via Gibbs sampling on evolutionary networks by Yun Yu, Christopher Jermaine, Luay Nakhleh

    Published 2016-11-01
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  4. 4
    Gene duplicability-connectivity-complexity across organisms and a neutral evolutionary explanation.

    Gene duplicability-connectivity-complexity across organisms and a neutral evolutionary explanation. by Yun Zhu, Peng Du, Luay Nakhleh

    Published 2012-01-01
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  5. 5
    Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent.

    Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent. by Dingqiao Wen, Yun Yu, Luay Nakhleh

    Published 2016-05-01
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  6. 6
    Correction: Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent.

    Correction: Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent. by Dingqiao Wen, Yun Yu, Luay Nakhleh

    Published 2017-02-01
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  7. 7
    The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection.

    The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection. by Yun Yu, James H Degnan, Luay Nakhleh

    Published 2012-01-01
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  8. 8
    Stranger in a strange land: the experiences of immigrant researchers

    Stranger in a strange land: the experiences of immigrant researchers by Sophien Kamoun, Rosa Lozano-Durán, Luay Nakhleh

    Published 2017-12-01
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  9. 9
    Annotation-free delineation of prokaryotic homology groups.

    Annotation-free delineation of prokaryotic homology groups. by Yongze Yin, Huw A Ogilvie, Luay Nakhleh

    Published 2022-06-01
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  10. 10
    Modeling integrated cellular machinery using hybrid Petri-Boolean networks.

    Modeling integrated cellular machinery using hybrid Petri-Boolean networks. by Natalie Berestovsky, Wanding Zhou, Deepak Nagrath, Luay Nakhleh

    Published 2013-01-01
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  11. 11
    Methods for copy number aberration detection from single-cell DNA-sequencing data

    Methods for copy number aberration detection from single-cell DNA-sequencing data by Xian F. Mallory, Mohammadamin Edrisi, Nicholas Navin, Luay Nakhleh

    Published 2020-08-01
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  12. 12
    Accurate integration of single-cell DNA and RNA for analyzing intratumor heterogeneity using MaCroDNA

    Accurate integration of single-cell DNA and RNA for analyzing intratumor heterogeneity using MaCroDNA by Mohammadamin Edrisi, Xiru Huang, Huw A. Ogilvie, Luay Nakhleh

    Published 2023-12-01
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  13. 13
    Assessing the performance of methods for copy number aberration detection from single-cell DNA sequencing data.

    Assessing the performance of methods for copy number aberration detection from single-cell DNA sequencing data. by Xian F Mallory, Mohammadamin Edrisi, Nicholas Navin, Luay Nakhleh

    Published 2020-07-01
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  14. 14
    Comments on the model parameters in “SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models”

    Comments on the model parameters in “SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models” by Hamim Zafar, Anthony Tzen, Nicholas Navin, Ken Chen, Luay Nakhleh

    Published 2019-05-01
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  15. 15
    NestedBD: Bayesian inference of phylogenetic trees from single-cell copy number profiles under a birth-death model

    NestedBD: Bayesian inference of phylogenetic trees from single-cell copy number profiles under a birth-death model by Yushu Liu, Mohammadamin Edrisi, Zhi Yan, Huw A Ogilvie, Luay Nakhleh

    Published 2024-04-01
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  16. 16
    Bayesian inference of phylogenetic networks from bi-allelic genetic markers.

    Bayesian inference of phylogenetic networks from bi-allelic genetic markers. by Jiafan Zhu, Dingqiao Wen, Yun Yu, Heidi M Meudt, Luay Nakhleh

    Published 2018-01-01
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  17. 17
    The signaling petri net-based simulator: a non-parametric strategy for characterizing the dynamics of cell-specific signaling networks.

    The signaling petri net-based simulator: a non-parametric strategy for characterizing the dynamics of cell-specific signaling networks. by Derek Ruths, Melissa Muller, Jen-Te Tseng, Luay Nakhleh, Prahlad T Ram

    Published 2008-02-01
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  18. 18
    An HMM-based comparative genomic framework for detecting introgression in eukaryotes.

    An HMM-based comparative genomic framework for detecting introgression in eukaryotes. by Kevin J Liu, Jingxuan Dai, Kathy Truong, Ying Song, Michael H Kohn, Luay Nakhleh

    Published 2014-06-01
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  19. 19
    Matrilysin/MMP-7 Cleavage of Perlecan/HSPG2 Complexed with Semaphorin 3A Supports FAK-Mediated Stromal Invasion by Prostate Cancer Cells

    Matrilysin/MMP-7 Cleavage of Perlecan/HSPG2 Complexed with Semaphorin 3A Supports FAK-Mediated Stromal Invasion by Prostate Cancer Cells by Brian J. Grindel, Jerahme R. Martinez, Tristen V. Tellman, Daniel A. Harrington, Hamim Zafar, Luay Nakhleh, Leland W. Chung, Mary C. Farach-Carson

    Published 2018-05-01
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  20. 20
    Mutations in global regulators lead to metabolic selection during adaptation to complex environments.

    Mutations in global regulators lead to metabolic selection during adaptation to complex environments. by Gerda Saxer, Michael D Krepps, Eric D Merkley, Charles Ansong, Brooke L Deatherage Kaiser, Marie-Thérèse Valovska, Nikola Ristic, Ping T Yeh, Vittal P Prakash, Owen P Leiser, Luay Nakhleh, Henry S Gibbons, Helen W Kreuzer, Yousif Shamoo

    Published 2014-12-01
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