An R package for divergence analysis of omics data. by Wikum Dinalankara, Qian Ke, Donald Geman, Luigi Marchionni

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PhenoSV: interpretable phenotype-aware model for the prioritization of genes affected by structural variants by Zhuoran Xu, Quan Li, Luigi Marchionni, Kai Wang

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REPAC: analysis of alternative polyadenylation from RNA-sequencing data by Eddie L. Imada, Christopher Wilks, Ben Langmead, Luigi Marchionni

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Efficient representations of tumor diversity with paired DNA-RNA aberrations. by Qian Ke, Wikum Dinalankara, Laurent Younes, Donald Geman, Luigi Marchionni

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ZNF92, an unexplored transcription factor with remarkably distinct breast cancer over-expression associated with prognosis and cell-of-origin by Mohammad Kamran, Udayan Bhattacharya, Mohamed Omar, Luigi Marchionni, Tan A. Ince

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Host Blood Gene Signatures Can Detect the Progression to Severe and Cerebral Malaria by Mohamed Omar, Luigi Marchionni, Georg Häcker, Georg Häcker, Mohamed Tarek Badr, Mohamed Tarek Badr

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Influenza Vaccination and COVID-19 Mortality in the USA: An Ecological Study by Claudio Zanettini, Mohamed Omar, Wikum Dinalankara, Eddie Luidy Imada, Elizabeth Colantuoni, Giovanni Parmigiani, Luigi Marchionni

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Hobotnica: exploring molecular signature quality [version 2; peer review: 2 approved] by Luigi Marchionni, Alexander Favorov, Yulia Medvedeva, Sarah Wheelan, Alexey Sizykh, Bahman Afsari, Anna Budkina, Alexey Stupnikov

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Correction to: Differential gene methylation and expression of HOX transcription factor family in orbitofacial neurofibroma by Antje Arnold, Eddie Luidy Imada, M. Lisa Zhang, Deepak P. Edward, Luigi Marchionni, Fausto J. Rodriguez

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Identifying Personalized Metabolic Signatures in Breast Cancer by Priyanka Baloni, Wikum Dinalankara, John C. Earls, Theo A. Knijnenburg, Donald Geman, Luigi Marchionni, Nathan D. Price

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Notch-based gene signature for predicting the response to neoadjuvant chemotherapy in triple-negative breast cancer by Mohamed Omar, Pier Vitale Nuzzo, Francesco Ravera, Sara Bleve, Giuseppe Nicolò Fanelli, Claudio Zanettini, Itzel Valencia, Luigi Marchionni

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Using biological constraints to improve prediction in precision oncology by Mohamed Omar, Wikum Dinalankara, Lotte Mulder, Tendai Coady, Claudio Zanettini, Eddie Luidy Imada, Laurent Younes, Donald Geman, Luigi Marchionni

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Synthesizer: Expediting synthesis studies from context-free data with information retrieval techniques. by Lisa M Gandy, Jordan Gumm, Benjamin Fertig, Anne Thessen, Michael J Kennish, Sameer Chavan, Luigi Marchionni, Xiaoxin Xia, Shambhavi Shankrit, Elana J Fertig

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Correction: Identification and Validation of Protein Biomarkers of Response to Neoadjuvant Platinum Chemotherapy in Muscle Invasive Urothelial Carcinoma. by Alexander S Baras, Nilay Gandhi, Enrico Munari, Sheila Faraj, Luciana Shultz, Luigi Marchionni, Mark Schoenberg, Noah Hahn, Mohammad Obaidul Hoque, David Berman, Trinity J Bivalacqua, George Netto

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Identification and Validation of Protein Biomarkers of Response to Neoadjuvant Platinum Chemotherapy in Muscle Invasive Urothelial Carcinoma. by Alexander S Baras, Nilay Gandhi, Enrico Munari, Sheila Faraj, Luciana Shultz, Luigi Marchionni, Mark Schoenberg, Noah Hahn, Mohammad Obaidul Hoque, David Berman, Trinity J Bivalacqua, George Netto

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Cell-type specific expression of oncogenic and tumor suppressive microRNAs in the human prostate and prostate cancer by Binod Kumar, Avi Z. Rosenberg, Su Mi Choi, Karen Fox-Talbot, Angelo M. De Marzo, Larisa Nonn, W. Nathaniel Brennen, Luigi Marchionni, Marc K. Halushka, Shawn E. Lupold

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Association of self-identified race and genetic ancestry with the immunogenomic landscape of primary prostate cancer by Thiago Vidotto, Eddie L. Imada, Farzana Faisal, Sanjana Murali, Adrianna A. Mendes, Harsimar Kaur, Siqun Zheng, Jianfeng Xu, Edward M. Schaeffer, William B. Isaacs, Karen S. Sfanos, Luigi Marchionni, Tamara L. Lotan

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Selective analysis of cancer-cell intrinsic transcriptional traits defines novel clinically relevant subtypes of colorectal cancer by Claudio Isella, Francesco Brundu, Sara E. Bellomo, Francesco Galimi, Eugenia Zanella, Roberta Porporato, Consalvo Petti, Alessandro Fiori, Francesca Orzan, Rebecca Senetta, Carla Boccaccio, Elisa Ficarra, Luigi Marchionni, Livio Trusolino, Enzo Medico, Andrea Bertotti

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Bifunctional immune checkpoint-targeted antibody-ligand traps that simultaneously disable TGFβ enhance the efficacy of cancer immunotherapy by Rajani Ravi, Kimberly A. Noonan, Vui Pham, Rishi Bedi, Alex Zhavoronkov, Ivan V. Ozerov, Eugene Makarev, Artem V. Artemov, Piotr T. Wysocki, Ranee Mehra, Sridhar Nimmagadda, Luigi Marchionni, David Sidransky, Ivan M. Borrello, Evgeny Izumchenko, Atul Bedi

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Next-generation sequence analysis of cancer xenograft models. by Fernando J Rossello, Richard W Tothill, Kara Britt, Kieren D Marini, Jeanette Falzon, David M Thomas, Craig D Peacock, Luigi Marchionni, Jason Li, Samara Bennett, Erwin Tantoso, Tracey Brown, Philip Chan, Luciano G Martelotto, D Neil Watkins

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