Analysis of ultra low genome conservation in Clostridium difficile. 由 Joy Scaria, Lalit Ponnala, Tavan Janvilisri, Weiwei Yan, Lukas A Mueller, Yung-Fu Chang

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MangoBase: A Genomics Portal and Gene Expression Atlas for <i>Mangifera indica</i> 由 Aynhoa Gómez-Ollé, Amanda Bullones, Jose I. Hormaza, Lukas A. Mueller, Noe Fernandez-Pozo

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Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives 由 Susan R. Strickler, Aureliano Bombarely, Jesse D. Munkvold, Thomas York, Naama Menda, Gregory B. Martin, Lukas A. Mueller

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Annotation of Hox cluster and Hox cofactor genes in the Asian citrus psyllid, Diaphorina citri, reveals novel features 由 Teresa D. Shippy, Prashant S. Hosmani, Mirella Flores-Gonzalez, Lukas A. Mueller, Wayne B. Hunter, Susan J. Brown, Tom D’Elia, Surya Saha

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Annotation of segmentation pathway genes in the Asian citrus psyllid, Diaphorina citri 由 Sherry Miller, Teresa D. Shippy, Prashant S. Hosmani, Mirella Flores-Gonzalez, Lukas A. Mueller, Wayne B. Hunter, Susan J. Brown, Tom D’Elia, Surya Saha

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Ubiquitin-proteasome pathway annotation in Diaphorina citri can reveal potential targets for RNAi-based pest management 由 Will Tank, Teresa Shippy, Amanda Thate, Crissy Massimino, Prashant S. Hosmani, Mirella Flores-Gonzalez, Lukas A. Mueller, Wayne B. Hunter, Susan J. Brown, Tom D’Elia, Surya Saha

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In silico characterization of chitin deacetylase genes in the Diaphorina citri genome 由 Sherry Miller, Teresa D. Shippy, Blessy Tamayo, Prashant S. Hosmani, Mirella Flores-Gonzalez, Lukas A. Mueller, Wayne B. Hunter, Susan J. Brown, Tom D’Elia, Surya Saha

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Annotation of chitin biosynthesis genes in Diaphorina citri, the Asian citrus psyllid 由 Sherry Miller, Teresa D. Shippy, Blessy Tamayo, Prashant S. Hosmani, Mirella Flores-Gonzalez, Lukas A. Mueller, Wayne B. Hunter, Susan J. Brown, Tom D’Elia, Surya Saha

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Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri 由 Teresa D. Shippy, Sherry Miller, Blessy Tamayo, Prashant S. Hosmani, Mirella Flores-Gonzalez, Lukas A. Mueller, Wayne B. Hunter, Susan J. Brown, Tom D’Elia, Surya Saha

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Utilizing a chromosomal-length genome assembly to annotate the Wnt signaling pathway in the Asian citrus psyllid, Diaphorina citri 由 Chad Vosburg, Max Reynolds, Rita Noel, Teresa Shippy, Prashant S. Hosmani, Mirella Flores-Gonzalez, Lukas A. Mueller, Wayne B. Hunter, Susan J. Brown, Tom D’Elia, Surya Saha

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Genome sequence for the blue‐flowered Andean shrub Iochroma cyaneum reveals extensive discordance across the berry clade of Solanaceae 由 Adrian F. Powell, Jing Zhang, Duncan Hauser, Julianne A. Vilela, Alice Hu, Daniel J. Gates, Lukas A. Mueller, Fay‐Wei Li, Susan R. Strickler, Stacey D. Smith

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Genomic identification, annotation, and comparative analysis of Vacuolar-type ATP synthase subunits in Diaphorina citri 由 Rebecca Grace, Crissy Massimino, Teresa D. Shippy, Will Tank, Prashant S. Hosmani, Mirella Flores-Gonzalez, Lukas A. Mueller, Wayne B. Hunter, Joshua B. Benoit, Susan J. Brown, Tom D’Elia, Surya Saha

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Multi-omics Comparison Reveals Landscape of Citrus limon and Citrus sinensis Response to ‘Candidatus Liberibacter asiaticus’ 由 Elizabeth L. Chin, John Ramsey, Surya Saha, Darya Mishchuk, Juan Chavez, Kevin Howe, Xuefei Zhong, Mirella Flores-Gonzalez, Elizabeth Mitrovic, MaryLou Polek, Kris Godfrey, Lukas A. Mueller, James Bruce, Michelle Heck, Carolyn M. Slupsky

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Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions 由 Renata de Castro Nunes, Simon Orozco-Arias, Dominique Crouzillat, Lukas A. Mueller, Suzy R. Strickler, Patrick Descombes, Coralie Fournier, Deborah Moine, Alexandre de Kochko, Priscila M. Yuyama, André L. L. Vanzela, Romain Guyot, Romain Guyot

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Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding 由 Xin Wang, Lei Gao, Chen Jiao, Stefanos Stravoravdis, Prashant S. Hosmani, Surya Saha, Jing Zhang, Samantha Mainiero, Susan R. Strickler, Carmen Catala, Gregory B. Martin, Lukas A. Mueller, Julia Vrebalov, James J. Giovannoni, Shan Wu, Zhangjun Fei

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Independent evolution of ancestral and novel defenses in a genus of toxic plants (Erysimum, Brassicaceae) 由 Tobias Züst, Susan R Strickler, Adrian F Powell, Makenzie E Mabry, Hong An, Mahdieh Mirzaei, Thomas York, Cynthia K Holland, Pavan Kumar, Matthias Erb, Georg Petschenka, José-María Gómez, Francisco Perfectti, Caroline Müller, J Chris Pires, Lukas A Mueller, Georg Jander

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Mucosal metabolites fuel the growth and virulence of E. coli linked to Crohn’s disease 由 Shiying Zhang, Xochitl Morgan, Belgin Dogan, Francois-Pierre Martin, Suzy Strickler, Akihiko Oka, Jeremy Herzog, Bo Liu, Scot E. Dowd, Curtis Huttenhower, Matthieu Pichaud, Esra I. Dogan, Jack Satsangi, Randy Longman, Rhonda Yantiss, Lukas A. Mueller, Ellen J. Scherl, R. Balfour Sartor, Kenneth W. Simpson

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Annotation of glycolysis, gluconeogenesis, and trehaloneogenesis pathways provide insight into carbohydrate metabolism in the Asian citrus psyllid 由 Blessy Tamayo, Kyle Kercher, Chad Vosburg, Crissy Massimino, Margaryta R. Jernigan, Denisse L. Hasan, Douglas Harper, Anuja Mathew, Samuel Adkins, Teresa Shippy, Prashant S. Hosmani, Mirella Flores-Gonzalez, Naftali Panitz, Lukas A. Mueller, Wayne B. Hunter, Joshua B. Benoit, Susan J. Brown, Tom D’Elia, Surya Saha

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Annotation of putative circadian rhythm-associated genes in Diaphorina citri (Hemiptera: Liviidae) 由 Max Reynolds, Lucas de Oliveira, Chad Vosburg, Thomson Paris, Crissy Massimino, Jordan Norus, Yasmin Ortiz, Michelle Espino, Nina Davis, Ron Masse, Alan Neiman, Rachel Holcomb, Kylie Gervais, Melissa Kemp, Maria Hoang, Teresa D. Shippy, Prashant S. Hosmani, Mirella Flores-Gonzalez, Kirsten Pelz-Stelinski, Jawwad A. Qureshi, Lukas A. Mueller, Wayne B. Hunter, Joshua B. Benoit, Susan J. Brown, Tom D’Elia, Surya Saha

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The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems 由 Elizabeth Arnaud, Marie-Angélique Laporte, Soonho Kim, Céline Aubert, Sabina Leonelli, Berta Miro, Laurel Cooper, Pankaj Jaiswal, Gideon Kruseman, Rosemary Shrestha, Pier Luigi Buttigieg, Christopher J. Mungall, Julian Pietragalla, Afolabi Agbona, Jacqueline Muliro, Jeffrey Detras, Vilma Hualla, Abhishek Rathore, Roma Rani Das, Ibnou Dieng, Guillaume Bauchet, Naama Menda, Cyril Pommier, Felix Shaw, David Lyon, Leroy Mwanzia, Henry Juarez, Enrico Bonaiuti, Brian Chiputwa, Olatunbosun Obileye, Sandrine Auzoux, Esther Dzalé Yeumo, Lukas A. Mueller, Kevin Silverstein, Alexandra Lafargue, Erick Antezana, Medha Devare, Brian King

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