Unveiling the Multilocus Sequence Typing (MLST) Schemes and Core Genome Phylogenies for Genotyping Chlamydia trachomatis by Luz H. Patiño, Luz H. Patiño, Milena Camargo, Milena Camargo, Marina Muñoz, Dora I. Ríos-Chaparro, Manuel A. Patarroyo, Manuel A. Patarroyo, Juan D. Ramírez

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Genomic Diversification, Structural Plasticity, and Hybridization in Leishmania (Viannia) braziliensis by Luz H. Patino, Marina Muñoz, Lissa Cruz-Saavedra, Carlos Muskus, Juan David Ramírez

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Characterizing SARS-CoV-2 genome diversity circulating in South American countries: Signatures of potentially emergent lineages? by Marina Muñoz, Luz H. Patiño, Nathalia Ballesteros, Alberto Paniz-Mondolfi, Juan David Ramírez

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Minor temperature shifts do not affect chromosomal ploidy but cause transcriptomic changes in Leishmania braziliensis promastigotes in vitro by Nathalia Ballesteros, Nubia M Vásquez, Luz H Patiño, Lissa Cruz-Saavedra, Juan David Ramírez

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Filling the gaps in <i>Leishmania naiffi</i> and <i>Leishmania guyanensis</i> genome plasticity by Luz H Patiño, Marina Muñoz, Paula Pavia, Carlos Muskus, Maryia Shaban, Alberto Paniz-Mondolfi, Juan David Ramírez

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Genomic Diversity of SARS-CoV-2 Omicron Variant in South American Countries by Nicolas Luna, Marina Muñoz, Angie L. Ramírez, Luz H. Patiño, Sergio Andres Castañeda, Nathalia Ballesteros, Juan David Ramírez

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Spatial distribution, Leishmania species and clinical traits of Cutaneous Leishmaniasis cases in the Colombian army. by Luz H Patino, Claudia Mendez, Omaira Rodriguez, Yanira Romero, Daniel Velandia, Maria Alvarado, Julie Pérez, Maria Clara Duque, Juan David Ramírez

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Amplicon-based next-generation sequencing reveals the co-existence of multiple Leishmania species in patients with visceral leishmaniasis by Adriana Castillo-Castañeda, Luz H. Patiño, Marina Muñoz, Martha S. Ayala, Maryi Segura, Jessica Bautista, Maryia V. Shaban, Alberto Paniz-Mondolfi, Juan David Ramírez

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Draft genomes of Blastocystis subtypes from human samples of Colombia by Adriana Higuera, Dayana E. Salas-Leiva, Bruce Curtis, Luz H. Patiño, Dandan Zhao, Jon Jerlström-Hultqvist, Marlena Dlutek, Marina Muñoz, Andrew J. Roger, Juan David Ramírez

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An overview of the trypanosomatid (Kinetoplastida: Trypanosomatidae) parasites infecting several mammal species in Colombia by Adriana C. Castillo-Castañeda, Luz H. Patiño, Maria Fernanda Zuñiga, Omar Cantillo-Barraza, Martha S. Ayala, Maryi Segura, Jessica Bautista, Plutarco Urbano, Jeiczon Jaimes-Dueñez, Juan David Ramírez

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First report and genome sequencing of SARS-CoV-2 in a cat (Felis catus) in Colombia by Yesica Botero, Juan David Ramírez, Héctor Serrano-Coll, Ader Aleman, Nathalia Ballesteros, Caty Martinez, Marina Muñoz, Alfonso Calderon, Luz H Patiño, Camilo Guzman, Sergio Castañeda, Yonairo Hererra, Salim Mattar

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Human Lobomycosis Caused by Paracoccidioides (Lacazia) loboi, Panama, 2022 by Jose A. Suárez, Betty Cerrud, Monica Pachar, Luz H. Patiño, Jason Reidy, Amina Chace, Roderick Chen-Camaño, Diógenes Alvarado-Barría, Mohammad Z. Nakadar, Juan D. Ramirez, Alberto Paniz-Mondolfi

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Evolution and Epidemic Spread of SARS-CoV-2 in Colombia: A Year into the Pandemic by Sergio Castañeda, Luz H. Patiño, Marina Muñoz, Nathalia Ballesteros, Enzo Guerrero-Araya, Daniel Paredes-Sabja, Carolina Flórez, Sergio Gomez, Carolina Ramírez-Santana, Gustavo Salguero, Juan E. Gallo, Alberto E. Paniz-Mondolfi, Juan David Ramírez

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Phylogenomic Evidence of Reinfection and Persistence of SARS-CoV-2: First Report from Colombia by Juan David Ramírez, Marina Muñoz, Nathalia Ballesteros, Luz H. Patiño, Sergio Castañeda, Carlos A. Rincón, Claudia Mendez, Carolina Oliveros, Julie Perez, Elizabeth K. Márquez, Frank de los Santos Ortiz, Camilo A. Correa-Cárdenas, Maria Clara Duque, Alberto Paniz-Mondolfi

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Development of an Amplicon-Based Next-Generation Sequencing Protocol to Identify Leishmania Species and Other Trypanosomatids in Leishmaniasis Endemic Areas by Luz H. Patiño, Adriana C. Castillo-Castañeda, Marina Muñoz, Jesus E. Jaimes, Nicolas Luna-Niño, Carolina Hernández, Martha S. Ayala, Patricia Fuya, Claudia Mendez, Carlos E. Hernández-Pereira, Lourdes Delgado, Claudia M. Sandoval-Ramírez, Plutarco Urbano, Alberto Paniz-Mondolfi, Juan David Ramírez

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Epidemiological Dynamics of SARS-CoV-2 Variants During Social Protests in Cali, Colombia by Luz H. Patiño, Sergio Castañeda, Marina Muñoz, Marina Muñoz, Nathalia Ballesteros, Angie L. Ramirez, Nicolas Luna, Enzo Guerrero-Araya, Enzo Guerrero-Araya, Julie Pérez, Camilo A. Correa-Cárdenas, Maria Clara Duque, Claudia Méndez, Carolina Oliveros, Maryia V. Shaban, Alberto E. Paniz-Mondolfi, Juan David Ramírez, Juan David Ramírez

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Genomic epidemiology of SARS-CoV-2 variants during the first two years of the pandemic in Colombia by Cinthy Jimenez-Silva, Ricardo Rivero, Jordan Douglas, Remco Bouckaert, Ch. Julian Villabona-Arenas, Katherine E. Atkins, Bertha Gastelbondo, Alfonso Calderon, Camilo Guzman, Daniel Echeverri-De la Hoz, Marina Muñoz, Nathalia Ballesteros, Sergio Castañeda, Luz H. Patiño, Angie Ramirez, Nicolas Luna, Alberto Paniz-Mondolfi, Hector Serrano-Coll, Juan David Ramirez, Salim Mattar, Alexei J. Drummond

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SARS-CoV-2 in Transit: Characterization of SARS-CoV-2 Genomes From Venezuelan Migrants in Colombia by Luz H. Patiño, Nathalia Ballesteros, Marina Muñoz, Sergio Castañeda, Carolina Hernández, Sergio Gomez, Carolina Florez, Angelica Rico, Liseth Pardo, Carlos E. Hernandez-Pereira, Lourdes Delgado-Noguera, Maria E. Grillet, Matthew M. Hernandez, Zenab Khan, Adriana van de Guchte, Jayeeta Dutta, Ana S Gonzalez-Reiche, Viviana Simon, Harm van Bakel, Emilia Mia Sordillo, Juan David Ramírez, Alberto E. Paniz-Mondolfi

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Phylogenetic landscape of Monkeypox Virus (MPV) during the early outbreak in New York City, 2022 by Luz H. Patiño, Susana Guerra, Marina Muñoz, Nicolas Luna, Keith Farrugia, Adriana van de Guchte, Zain Khalil, Ana Silvia Gonzalez-Reiche, Matthew M. Hernandez, Radhika Banu, Paras Shrestha, Bernadette Liggayu, Adolfo Firpo Betancourt, David Reich, Carlos Cordon-Cardo, Randy Albrecht, Rebecca Pearl, Viviana Simon, Aria Rooker, Emilia Mia Sordillo, Harm van Bakel, Adolfo García-Sastre, Dusan Bogunovic, Gustavo Palacios, Alberto Paniz Mondolfi, Juan David Ramírez

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Safety and efficacy of convalescent plasma for severe COVID-19: a randomized, single blinded, parallel, controlled clinical study by Manuel Rojas, Yhojan Rodríguez, Juan Carlos Hernández, Juan C. Díaz-Coronado, José Alejandro Daza Vergara, Verónica Posada Vélez, Jessica Porras Mancilla, Iván Araujo, Jairo Torres Yepes, Oscar Briceño Ricaurte, Juan Mauricio Pardo-Oviedo, Diana M. Monsalve, Yeny Acosta-Ampudia, Carolina Ramírez-Santana, Paula Gaviria García, Lina Acevedo Landinez, Luisa Duarte Correales, Jeser Santiago Grass, Cristian Ricaurte Pérez, Gustavo Salguero López, Nataly Mateus, Laura Mancera, Ronald Rengifo Devia, Juan Esteban Orjuela, Christian R. Parra-Moreno, Andrés Alfonso Buitrago, Inés Elvira Ordoñez, Claudia Fabra Osorio, Nathalia Ballesteros, Luz H. Patiño, Sergio Castañeda, Marina Muñoz, Juan David Ramírez, Paul Bastard, Adrian Gervais, Lucy Bizien, Jean-Laurent Casanova, Bernardo Camacho, Juan Esteban Gallo, Oscar Gómez, Adriana Rojas-Villarraga, Carlos E. Pérez, Rubén Manrique, Rubén D. Mantilla, Juan-Manuel Anaya

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