Codon usage domains over bacterial chromosomes. by Marc Bailly-Bechet, Antoine Danchin, Mudassar Iqbal, Matteo Marsili, Massimo Vergassola

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The biased nucleotide composition of HIV-1 triggers type I interferon response and correlates with subtype D increased pathogenicity. by Nicolas Vabret, Marc Bailly-Bechet, Valérie Najburg, Michaela Müller-Trutwin, Bernard Verrier, Frédéric Tangy

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AvP: A software package for automatic phylogenetic detection of candidate horizontal gene transfers. by Georgios D Koutsovoulos, Solène Granjeon Noriot, Marc Bailly-Bechet, Etienne G J Danchin, Corinne Rancurel

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Improvement of eukaryotic protein predictions from soil metagenomes by Carole Belliardo, Georgios D. Koutsovoulos, Corinne Rancurel, Mathilde Clément, Justine Lipuma, Marc Bailly-Bechet, Etienne G. J. Danchin

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Genome Expression Dynamics Reveal the Parasitism Regulatory Landscape of the Root-Knot Nematode <i>Meloidogyne incognita</i> and a Promoter Motif Associated with Effector Genes by Martine Da Rocha, Caroline Bournaud, Julie Dazenière, Peter Thorpe, Marc Bailly-Bechet, Clément Pellegrin, Arthur Péré, Priscila Grynberg, Laetitia Perfus-Barbeoch, Sebastian Eves-van den Akker, Etienne G. J. Danchin

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Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest by Georgios D. Koutsovoulos, Eder Marques, Marie‐Jeanne Arguel, Laurent Duret, Andressa C. Z. Machado, Regina M. D. G. Carneiro, Djampa K. Kozlowski, Marc Bailly‐Bechet, Philippe Castagnone‐Sereno, Erika V. S. Albuquerque, Etienne G. J. Danchin

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Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats by Ana Paula Zotta Mota, Georgios D. Koutsovoulos, Laetitia Perfus-Barbeoch, Evelin Despot-Slade, Karine Labadie, Jean-Marc Aury, Karine Robbe-Sermesant, Marc Bailly-Bechet, Caroline Belser, Arthur Péré, Corinne Rancurel, Djampa K. Kozlowski, Rahim Hassanaly-Goulamhoussen, Martine Da Rocha, Benjamin Noel, Nevenka Meštrović, Patrick Wincker, Etienne G. J. Danchin

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Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes. by Romain Blanc-Mathieu, Laetitia Perfus-Barbeoch, Jean-Marc Aury, Martine Da Rocha, Jérôme Gouzy, Erika Sallet, Cristina Martin-Jimenez, Marc Bailly-Bechet, Philippe Castagnone-Sereno, Jean-François Flot, Djampa K Kozlowski, Julie Cazareth, Arnaud Couloux, Corinne Da Silva, Julie Guy, Yu-Jin Kim-Jo, Corinne Rancurel, Thomas Schiex, Pierre Abad, Patrick Wincker, Etienne G J Danchin

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