Evaluation of algorithm performance in ChIP-seq peak detection. by Elizabeth G Wilbanks, Marc T Facciotti

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The Exploration of Novel Regulatory Relationships Drives Haloarchaeal Operon-Like Structural Dynamics over Short Evolutionary Distances by Phillip Seitzer, Andrew I. Yao, Ariana Cisneros, Marc T. Facciotti

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An integrated pipeline for de novo assembly of microbial genomes. by Andrew Tritt, Jonathan A Eisen, Marc T Facciotti, Aaron E Darling

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Conserved substitution patterns around nucleosome footprints in eukaryotes and Archaea derive from frequent nucleosome repositioning through evolution. by Tobias Warnecke, Erin A Becker, Marc T Facciotti, Corey Nislow, Ben Lehner

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Gene Gangs of the Chloroviruses: Conserved Clusters of Collinear Monocistronic Genes by Phillip Seitzer, Adrien Jeanniard, Fangrui Ma, James L. Van Etten, Marc T. Facciotti, David D. Dunigan

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Draft genome sequence of Halorubrum tropicale strain V5, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico by Rubén Sánchez-Nieves, Marc T. Facciotti, Sofía Saavedra-Collado, Lizbeth Dávila-Santiago, Roy Rodríguez-Carrero, Rafael Montalvo-Rodríguez

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Combining Microbial Culturing With Mathematical Modeling in an Introductory Course-Based Undergraduate Research Experience by Robert E. Furrow, Hyunsoo G. Kim, Hyunsoo G. Kim, Samah M. R. Abdelrazek, Katherine Dahlhausen, Andrew I. Yao, Andrew I. Yao, Jonathan A. Eisen, Jonathan A. Eisen, Jonathan A. Eisen, Mark S. Goldman, Mark S. Goldman, John G. Albeck, Marc T. Facciotti, Marc T. Facciotti

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A Large and Phylogenetically Diverse Class of Type 1 Opsins Lacking a Canonical Retinal Binding Site. by Erin A Becker, Andrew I Yao, Phillip M Seitzer, Tobias Kind, Ting Wang, Rich Eigenheer, Katie S Y Shao, Vladimir Yarov-Yarovoy, Marc T Facciotti

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Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response. by Erin A Becker, Phillip M Seitzer, Andrew Tritt, David Larsen, Megan Krusor, Andrew I Yao, Dongying Wu, Dominique Madern, Jonathan A Eisen, Aaron E Darling, Marc T Facciotti

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Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux. by Erin A Lynch, Morgan G I Langille, Aaron Darling, Elizabeth G Wilbanks, Caitlin Haltiner, Katie S Y Shao, Michael O Starr, Clotilde Teiling, Timothy T Harkins, Robert A Edwards, Jonathan A Eisen, Marc T Facciotti

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Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant. by Tomas Persson, Kai Battenberg, Irina V Demina, Theoden Vigil-Stenman, Brian Vanden Heuvel, Petar Pujic, Marc T Facciotti, Elizabeth G Wilbanks, Anna O'Brien, Pascale Fournier, Maria Antonia Cruz Hernandez, Alberto Mendoza Herrera, Claudine Médigue, Philippe Normand, Katharina Pawlowski, Alison M Berry

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