Microevolution and Gain or Loss of Mobile Genetic Elements of Outbreak-Related Listeria monocytogenes in Food Processing Environments Identified by Whole Genome Sequencing Analysis by Helen Yang, Maria Hoffmann, Marc W. Allard, Eric W. Brown, Yi Chen

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Whole genome sequencing and protein structure analyses of target genes for the detection of Salmonella by Lijun Hu, Guojie Cao, Eric W. Brown, Marc W. Allard, Li M. Ma, Guodong Zhang

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Metagenomic survey of agricultural water using long read sequencing: Considerations for a successful analysis by Meghan Maguire, Julie A. Kase, Eric W. Brown, Marc W. Allard, Steven M. Musser, Narjol González-Escalona

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Phylogenomic analysis identifies gene gains that define Salmonella enterica subspecies I. by E Kurt Lienau, Jeffrey M Blazar, Charles Wang, Eric W Brown, Robert Stones, Steven Musser, Marc W Allard

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Genes significantly associated with lineage II food isolates of Listeria monocytogenes by Cary Pirone-Davies, Yi Chen, Arthur Pightling, Gina Ryan, Yu Wang, Kuan Yao, Maria Hoffmann, Marc W. Allard

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Antimicrobial resistance and related gene analysis of Salmonella from egg and chicken sources by whole-genome sequencing by Lijun Hu, Guojie Cao, Eric W. Brown, Marc W. Allard, Li M. Ma, Ashraf A. Khan, Guodong Zhang

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Genome divergence and increased virulence of outbreak associated Salmonella enterica subspecies enterica serovar Heidelberg by Linto Antony, Melissa Behr, Donald Sockett, Dale Miskimins, Nicole Aulik, Jane Christopher-Hennings, Eric Nelson, Marc W. Allard, Joy Scaria

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Whole genome sequencing analyses of Listeria monocytogenes that persisted in a milkshake machine for a year and caused illnesses in Washington State by Zhen Li, Ailyn Pérez-Osorio, Yu Wang, Kaye Eckmann, William A. Glover, Marc W. Allard, Eric W. Brown, Yi Chen

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An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella by James B. Pettengill, Yan Luo, Steven Davis, Yi Chen, Narjol Gonzalez-Escalona, Andrea Ottesen, Hugh Rand, Marc W. Allard, Errol Strain

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Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water by Meghan Maguire, Padmini Ramachandran, Sandra Tallent, Mark K. Mammel, Eric W. Brown, Marc W. Allard, Steven M. Musser, Narjol González-Escalona

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The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica by James B. Pettengill, Ruth E. Timme, Rodolphe Barrangou, Magaly Toro, Marc W. Allard, Errol Strain, Steven M. Musser, Eric W. Brown

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Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States. by Yi Chen, Yan Luo, Phillip Curry, Ruth Timme, David Melka, Matthew Doyle, Mickey Parish, Thomas S Hammack, Marc W Allard, Eric W Brown, Errol A Strain

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Phylogenetic and antimicrobial resistance gene analysis of Salmonella Typhimurium strains isolated in Brazil by whole genome sequencing. by Fernanda Almeida, Amanda Aparecida Seribelli, Marta Inês Cazentini Medeiros, Dália Dos Prazeres Rodrigues, Alessandro de MelloVarani, Yan Luo, Marc W Allard, Juliana Pfrimer Falcão

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Enhanced biofilm and extracellular matrix production by chronic carriage versus acute isolates of Salmonella Typhi. by Aishwarya Devaraj, Juan F González, Bradley Eichar, Gatan Thilliez, Robert A Kingsley, Stephen Baker, Marc W Allard, Lauren O Bakaletz, John S Gunn, Steven D Goodman

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Genome Sequence, Assembly and Characterization of Two Metschnikowia fructicola Strains Used as Biocontrol Agents of Postharvest Diseases by Edoardo Piombo, Edoardo Piombo, Noa Sela, Michael Wisniewski, Maria Hoffmann, Maria L. Gullino, Maria L. Gullino, Marc W. Allard, Elena Levin, Davide Spadaro, Davide Spadaro, Samir Droby

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Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica by Maria Hoffmann, James B. Pettengill, Narjol Gonzalez-Escalona, John Miller, John Miller, Sherry L. Ayers, Shaohua Zhao, Marc W. Allard, Patrick F. McDermott, Eric W. Brown, Steven R. Monday

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Whole genome sequence datasets of Salmonella enterica serovar Saintpaul ST50 and serovar Worthington ST592 strains isolated from raw milk in Brazil by Elma L. Leite, Mauro M.S. Saraiva, Priscylla C. Vasconcelos, Daniel F.M. Monte, Marc W. Allard, Patrícia E.N. Givisiez, Wondwossen A. Gebreyes, Oliveiro C. Freitas Neto, Celso J.B. Oliveira

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Whole Genome DNA Sequence Analysis of Salmonella subspecies enterica serotype Tennessee obtained from related peanut butter foodborne outbreaks. by Mark R Wilson, Eric Brown, Chris Keys, Errol Strain, Yan Luo, Tim Muruvanda, Christopher Grim, Junia Jean-Gilles Beaubrun, Karen Jarvis, Laura Ewing, Gopal Gopinath, Darcy Hanes, Marc W Allard, Steven Musser

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Comparison of whole genome sequences from human and non-human Escherichia coli O26 strains by Keri N Norman, Michael L Clawson, Nancy N Strockbine, Robert E Mandrell, Roger eJohnson, Kim eZiebell, Shaohua eZhao, Pina M Fratamico, Robert eStones, Marc W Allard, James L Bono

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Genomic surveillance of antimicrobial resistance shows cattle and poultry are a moderate source of multi-drug resistant non-typhoidal Salmonella in Mexico. by Enrique Jesús Delgado-Suárez, Tania Palós-Guitérrez, Francisco Alejandro Ruíz-López, Cindy Fabiola Hernández Pérez, Nayarit Emérita Ballesteros-Nova, Orbelín Soberanis-Ramos, Rubén Danilo Méndez-Medina, Marc W Allard, María Salud Rubio-Lozano

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