Combining denoising of RNA-seq data and flux balance analysis for cluster analysis of single cells by Bruno G. Galuzzi, Marco Vanoni, Chiara Damiani

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Glucose Signaling-Mediated Coordination of Cell Growth and Cell Cycle in Saccharomyces Cerevisiae by Stefano Busti, Paola Coccetti, Lilia Alberghina, Marco Vanoni

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Cell size at S phase initiation: an emergent property of the G1/S network. by Matteo Barberis, Edda Klipp, Marco Vanoni, Lilia Alberghina

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Natural Products Attenuating Biosynthesis, Processing, and Activity of Ras Oncoproteins: State of the Art and Future Perspectives by Renata Tisi, Vadim Gaponenko, Marco Vanoni, Elena Sacco

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K-Ras Activation Induces Differential Sensitivity to Sulfur Amino Acid Limitation and Deprivation and to Oxidative and Anti-Oxidative Stress in Mouse Fibroblasts. by Gaia De Sanctis, Michela Spinelli, Marco Vanoni, Elena Sacco

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Glutamine deprivation induces abortive s-phase rescued by deoxyribonucleotides in k-ras transformed fibroblasts. by Daniela Gaglio, Chiara Soldati, Marco Vanoni, Lilia Alberghina, Ferdinando Chiaradonna

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An Optimized Workflow for the Analysis of Metabolic Fluxes in Cancer Spheroids Using Seahorse Technology by Gloria Campioni, Valentina Pasquale, Stefano Busti, Giacomo Ducci, Elena Sacco, Marco Vanoni

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Loop 7 of E2 enzymes: an ancestral conserved functional motif involved in the E2-mediated steps of the ubiquitination cascade. by Elena Papaleo, Nicola Casiraghi, Alberto Arrigoni, Marco Vanoni, Paola Coccetti, Luca De Gioia

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Tumor heterogeneity: preclinical models, emerging technologies, and future applications by Marco Proietto, Marco Proietto, Marco Proietto, Martina Crippa, Martina Crippa, Chiara Damiani, Chiara Damiani, Valentina Pasquale, Valentina Pasquale, Elena Sacco, Elena Sacco, Marco Vanoni, Marco Vanoni, Mara Gilardi, Mara Gilardi

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An ensemble approach to the study of the emergence of metabolic and proliferative disorders via Flux Balance Analysis by Giancarlo Mauri, Lilia Alberghina, Marco Vanoni, Dario Pescini, Daniela Gaglio, Sara Molinari, Riccardo Colombo, Chiara Damiani

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Profiling and Targeting of Energy and Redox Metabolism in Grade 2 Bladder Cancer Cells with Different Invasiveness Properties by Valentina Pasquale, Giacomo Ducci, Gloria Campioni, Adria Ventrici, Chiara Assalini, Stefano Busti, Marco Vanoni, Riccardo Vago, Elena Sacco

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Scatter-hoarding birds disperse seeds to sites unfavorable for plant regeneration by Marjorie C. Sorensen, Thomas Mueller, Isabel Donoso, Valentin Graf, Dominik Merges, Marco Vanoni, Wolfgang Fiedler, Eike Lena Neuschulz

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A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ... by Chiara Damiani, Riccardo Colombo, Daniela Gaglio, Fabrizia Mastroianni, Dario Pescini, Hans Victor Westerhoff, Giancarlo Mauri, Marco Vanoni, Lilia Alberghina

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An acidic loop and cognate phosphorylation sites define a molecular switch that modulates ubiquitin charging activity in Cdc34-like enzymes. by Elena Papaleo, Valeria Ranzani, Farida Tripodi, Alessandro Vitriolo, Claudia Cirulli, Piercarlo Fantucci, Lilia Alberghina, Marco Vanoni, Luca De Gioia, Paola Coccetti

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The Multi-Level Mechanism of Action of a Pan-Ras Inhibitor Explains its Antiproliferative Activity on Cetuximab-Resistant Cancer Cells by Renata Tisi, Michela Spinelli, Michela Spinelli, Alessandro Palmioli, Cristina Airoldi, Cristina Airoldi, Paolo Cazzaniga, Paolo Cazzaniga, Daniela Besozzi, Daniela Besozzi, Marco S. Nobile, Marco S. Nobile, Elisa Mazzoleni, Simone Arnhold, Luca De Gioia, Luca De Gioia, Rita Grandori, Francesco Peri, Marco Vanoni, Marco Vanoni, Elena Sacco, Elena Sacco

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Progranulin Oncogenic Network in Solid Tumors by Elisa Ventura, Giacomo Ducci, Reyes Benot Dominguez, Valentina Ruggiero, Antonino Belfiore, Elena Sacco, Marco Vanoni, Renato V. Iozzo, Antonio Giordano, Andrea Morrione

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Integration of single-cell RNA-seq data into population models to characterize cancer metabolism. by Chiara Damiani, Davide Maspero, Marzia Di Filippo, Riccardo Colombo, Dario Pescini, Alex Graudenzi, Hans Victor Westerhoff, Lilia Alberghina, Marco Vanoni, Giancarlo Mauri

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INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation. by Marzia Di Filippo, Dario Pescini, Bruno Giovanni Galuzzi, Marcella Bonanomi, Daniela Gaglio, Eleonora Mangano, Clarissa Consolandi, Lilia Alberghina, Marco Vanoni, Chiara Damiani

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Transcriptomics and Metabolomics Integration Reveals Redox-Dependent Metabolic Rewiring in Breast Cancer Cells by Marcella Bonanomi, Noemi Salmistraro, Giulia Fiscon, Federica Conte, Paola Paci, Valentina Bravatà, Giusi Irma Forte, Tatiana Volpari, Manuela Scorza, Fabrizia Mastroianni, Stefano D’Errico, Elenio Avolio, Gennaro Piccialli, Anna Maria Colangelo, Marco Vanoni, Daniela Gaglio, Lilia Alberghina

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Disruption of redox homeostasis for combinatorial drug efficacy in K-Ras tumors as revealed by metabolic connectivity profiling by Daniela Gaglio, Marcella Bonanomi, Silvia Valtorta, Rohit Bharat, Marilena Ripamonti, Federica Conte, Giulia Fiscon, Nicole Righi, Elisabetta Napodano, Federico Papa, Isabella Raccagni, Seth J. Parker, Ingrid Cifola, Tania Camboni, Paola Paci, Anna Maria Colangelo, Marco Vanoni, Christian M. Metallo, Rosa Maria Moresco, Lilia Alberghina

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