Nuclear receptors connect progenitor transcription factors to cell cycle control by Marta Neto, Marina Naval-Sánchez, Delphine Potier, Paulo S. Pereira, Dirk Geerts, Stein Aerts, Fernando Casares

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Leveraging transcriptome and epigenome landscapes to infer regulatory networks during the onset of sexual maturation by Amin R. Mohamed, Marina Naval-Sanchez, Moira Menzies, Bradley Evans, Harry King, Antonio Reverter, James W. Kijas

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Changed Patterns of Genomic Variation Following Recent Domestication: Selection Sweeps in Farmed Atlantic Salmon by Marina Naval-Sanchez, Sean McWilliam, Bradley Evans, José M. Yáñez, Ross D. Houston, James W. Kijas

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Robust target gene discovery through transcriptome perturbations and genome-wide enhancer predictions in Drosophila uncovers a regulatory basis for sensory specification. by Stein Aerts, Xiao-Jiang Quan, Annelies Claeys, Marina Naval Sanchez, Phillip Tate, Jiekun Yan, Bassem A Hassan

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Micrococcal nuclease sequencing of porcine sperm suggests enriched co-location between retained histones and genomic regions related to semen quality and early embryo development by Marta Gòdia, Yu Lian, Marina Naval-Sanchez, Inma Ponte, Joan Enric Rodríguez-Gil, Armand Sanchez, Alex Clop

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Chromatin accessibility and regulatory vocabulary across indicine cattle tissues by Pâmela A. Alexandre, Marina Naval-Sánchez, Moira Menzies, Loan T. Nguyen, Laercio R. Porto-Neto, Marina R. S. Fortes, Antonio Reverter

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Selection signatures in tropical cattle are enriched for promoter and coding regions and reveal missense mutations in the damage response gene HELB by Marina Naval-Sánchez, Laercio R. Porto-Neto, Diercles F. Cardoso, Ben J. Hayes, Hans D. Daetwyler, James Kijas, Antonio Reverter

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Systems Biology Reveals NR2F6 and TGFB1 as Key Regulators of Feed Efficiency in Beef Cattle by Pâmela A. Alexandre, Pâmela A. Alexandre, Marina Naval-Sanchez, Laercio R. Porto-Neto, José Bento S. Ferraz, Antonio Reverter, Heidge Fukumasu

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Benchmarking of ATAC Sequencing Data From BGI’s Low-Cost DNBSEQ-G400 Instrument for Identification of Open and Occupied Chromatin Regions by Marina Naval-Sanchez, Nikita Deshpande, Minh Tran, Jingyu Zhang, Majid Alhomrani, Majid Alhomrani, Walaa Alsanie, Walaa Alsanie, Quan Nguyen, Christian M. Nefzger

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Genome-Wide Co-Expression Distributions as a Metric to Prioritize Genes of Functional Importance by Pâmela A. Alexandre, Nicholas J. Hudson, Sigrid A. Lehnert, Marina R. S. Fortes, Marina Naval-Sánchez, Loan T. Nguyen, Laercio R. Porto-Neto, Antonio Reverter

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Mapping Gene Regulatory Networks in Drosophila Eye Development by Large-Scale Transcriptome Perturbations and Motif Inference by Delphine Potier, Kristofer Davie, Gert Hulselmans, Marina Naval Sanchez, Lotte Haagen, Vân Anh Huynh-Thu, Duygu Koldere, Arzu Celik, Pierre Geurts, Valerie Christiaens, Stein Aerts

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TDP-43 Loss-of-Function Causes Neuronal Loss Due to Defective Steroid Receptor-Mediated Gene Program Switching in Drosophila by Lies Vanden Broeck, Marina Naval-Sánchez, Yoshitsugu Adachi, Danielle Diaper, Pierre Dourlen, Julien Chapuis, Gernot Kleinberger, Marc Gistelinck, Christine Van Broeckhoven, Jean-Charles Lambert, Frank Hirth, Stein Aerts, Patrick Callaerts, Bart Dermaut

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iRegulon: from a gene list to a gene regulatory network using large motif and track collections. by Rekin's Janky, Annelien Verfaillie, Hana Imrichová, Bram Van de Sande, Laura Standaert, Valerie Christiaens, Gert Hulselmans, Koen Herten, Marina Naval Sanchez, Delphine Potier, Dmitry Svetlichnyy, Zeynep Kalender Atak, Mark Fiers, Jean-Christophe Marine, Stein Aerts

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Temporal perturbation of histone deacetylase activity reveals a requirement for HDAC1–3 in mesendoderm cell differentiation by Enakshi Sinniah, Zhixuan Wu, Sophie Shen, Marina Naval-Sanchez, Xiaoli Chen, Junxian Lim, Abbigail Helfer, Abishek Iyer, Jiahui Tng, Andrew J. Lucke, Robert C. Reid, Meredith A. Redd, Christian M. Nefzger, David P. Fairlie, Nathan J. Palpant

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Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds by Marina Naval-Sanchez, Quan Nguyen, Sean McWilliam, Laercio R. Porto-Neto, Ross Tellam, Tony Vuocolo, Antonio Reverter, Miguel Perez-Enciso, Rudiger Brauning, Shannon Clarke, Alan McCulloch, Wahid Zamani, Saeid Naderi, Hamid Reza Rezaei, Francois Pompanon, Pierre Taberlet, Kim C. Worley, Richard A. Gibbs, Donna M. Muzny, Shalini N. Jhangiani, Noelle Cockett, Hans Daetwyler, James Kijas

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Nicotinamide riboside attenuates age-associated metabolic and functional changes in hematopoietic stem cells by Xuan Sun, Benjamin Cao, Marina Naval-Sanchez, Tony Pham, Yu Bo Yang Sun, Brenda Williams, Shen Y. Heazlewood, Nikita Deshpande, Jinhua Li, Felix Kraus, James Rae, Quan Nguyen, Hamed Yari, Jan Schröder, Chad K. Heazlewood, Madeline Fulton, Jessica Hatwell-Humble, Kaustav Das Gupta, Ronan Kapetanovic, Xiaoli Chen, Matthew J. Sweet, Robert G. Parton, Michael T. Ryan, Jose M. Polo, Christian M. Nefzger, Susan K. Nilsson

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