Current state of data stewardship tools in life science by Anna Aksenova, Anoop Johny, Tim Adams, Phil Gribbon, Marc Jacobs, Martin Hofmann-Apitius, Martin Hofmann-Apitius

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Variational Autoencoder Modular Bayesian Networks for Simulation of Heterogeneous Clinical Study Data by Luise Gootjes-Dreesbach, Meemansa Sood, Meemansa Sood, Akrishta Sahay, Martin Hofmann-Apitius, Martin Hofmann-Apitius, Holger Fröhlich, Holger Fröhlich, Holger Fröhlich

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Pharmaceutical patent landscaping: A novel approach to understand patents from the drug discovery perspective by Yojana Gadiya, Philip Gribbon, Martin Hofmann-Apitius, Andrea Zaliani

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Editorial: Impacts of public-private collaborative research on Alzheimer's disease: the case of the innovative medicines initiative by Elisabetta Vaudano, Jean Georges, Martin Hofmann-Apitius, Donald Lo

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Quantifying mechanisms in neurodegenerative diseases (NDDs) using candidate mechanism perturbation amplitude (CMPA) algorithm by Reagon Karki, Alpha Tom Kodamullil, Charles Tapley Hoyt, Martin Hofmann-Apitius

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Computational Modelling Approaches on Epigenetic Factors in Neurodegenerative and Autoimmune Diseases and Their Mechanistic Analysis by Afroza Khanam Irin, Alpha Tom Kodamullil, Michaela Gündel, Martin Hofmann-Apitius

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Exploring SureChEMBL from a drug discovery perspective by Yojana Gadiya, Simran Shetty, Martin Hofmann-Apitius, Philip Gribbon, Andrea Zaliani

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Models and methods: a perspective of the impact of six IMI translational data-centric initiatives for Alzheimer’s disease and other neuropsychiatric disorders by Hilary North, Martin Hofmann-Apitius, Martien J. H. Kas, Hugh Marston, Magali Haas

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Transformer models in biomedicine by Sumit Madan, Manuel Lentzen, Johannes Brandt, Daniel Rueckert, Martin Hofmann-Apitius, Holger Fröhlich

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PathMe: merging and exploring mechanistic pathway knowledge by Daniel Domingo-Fernández, Sarah Mubeen, Josep Marín-Llaó, Charles Tapley Hoyt, Martin Hofmann-Apitius

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Rationalism in the face of GPT hypes: Benchmarking the output of large language models against human expert-curated biomedical knowledge graphs by Negin Sadat Babaiha, Sathvik Guru Rao, Jürgen Klein, Bruce Schultz, Marc Jacobs, Martin Hofmann-Apitius

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Forecasting individual progression trajectories in Alzheimer’s disease by Etienne Maheux, Igor Koval, Juliette Ortholand, Colin Birkenbihl, Damiano Archetti, Vincent Bouteloup, Stéphane Epelbaum, Carole Dufouil, Martin Hofmann-Apitius, Stanley Durrleman

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Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational–Experimental Approach by Marie-Thérèse Hopp, Daniel Domingo-Fernández, Yojana Gadiya, Milena S. Detzel, Regina Graf, Benjamin F. Schmalohr, Alpha T. Kodamullil, Diana Imhof, Martin Hofmann-Apitius

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A Computational Approach for Mapping Heme Biology in the Context of Hemolytic Disorders by Farah Humayun, Farah Humayun, Daniel Domingo-Fernández, Ajay Abisheck Paul George, Marie-Thérèse Hopp, Benjamin F. Syllwasschy, Milena S. Detzel, Charles Tapley Hoyt, Martin Hofmann-Apitius, Diana Imhof

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Comparison and aggregation of event sequences across ten cohorts to describe the consensus biomarker evolution in Alzheimer’s disease by Sepehr Golriz Khatami, Yasamin Salimi, Martin Hofmann-Apitius, Neil P. Oxtoby, Colin Birkenbihl, for the Alzheimer’s Disease Neuroimaging Initiative, the Japanese Alzheimer’s Disease Neuroimaging Initiative, the Alzheimer’s Disease Repository Without Borders Investigators

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A natural language processing system for the efficient updating of highly curated pathophysiology mechanism knowledge graphs by Negin Sadat Babaiha, Hassan Elsayed, Bide Zhang, Abish Kaladharan, Priya Sethumadhavan, Bruce Schultz, Jürgen Klein, Bruno Freudensprung, Vanessa Lage-Rupprecht, Alpha Tom Kodamullil, Marc Jacobs, Stefan Geissler, Sumit Madan, Martin Hofmann-Apitius

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Knowledge retrieval from PubMed abstracts and electronic medical records with the Multiple Sclerosis Ontology. by Ashutosh Malhotra, Michaela Gündel, Abdul Mateen Rajput, Heinz-Theodor Mevissen, Albert Saiz, Xavier Pastor, Raimundo Lozano-Rubi, Elena H Martinez-Lapiscina, Irati Zubizarreta, Bernd Mueller, Ekaterina Kotelnikova, Luca Toldo, Martin Hofmann-Apitius, Pablo Villoslada

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Data sharing in neurodegenerative disease research: challenges and learnings from the innovative medicines initiative public-private partnership model by Angela Bradshaw, Nigel Hughes, David Vallez-Garcia, Davit Chokoshvili, Andrew Owens, Clint Hansen, Kirsten Emmert, Walter Maetzler, Lewis Killin, Rodrigo Barnes, Anthony J. Brookes, Pieter Jelle Visser, Martin Hofmann-Apitius, Carlos Diaz, Lennert Steukers

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ADataViewer: exploring semantically harmonized Alzheimer’s disease cohort datasets by Yasamin Salimi, Daniel Domingo-Fernández, Carlos Bobis-Álvarez, Martin Hofmann-Apitius, Colin Birkenbihl, for the Alzheimer’s Disease Neuroimaging Initiative, the Japanese Alzheimer’s Disease Neuroimaging Initiative, for the Aging Brain: Vasculature, Ischemia, and Behavior Study, the Alzheimer’s Disease Repository Without Borders Investigators, for the European Prevention of Alzheimer’s Disease (EPAD) Consortium

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Curating, Collecting, and Cataloguing Global COVID-19 Datasets for the Aim of Predicting Personalized Risk by Sepehr Golriz Khatami, Astghik Sargsyan, Maria Francesca Russo, Daniel Domingo-Fernández, Andrea Zaliani, Abish Kaladharan, Priya Sethumadhavan, Sarah Mubeen, Yojana Gadiya, Reagon Karki, Stephan Gebel, Ram Kumar Ruppa Surulinathan, Vanessa Lage-Rupprecht, Saulius Archipovas, Geltrude Mingrone, Marc Jacobs, Carsten Claussen, Martin Hofmann-Apitius, Alpha Tom Kodamullil

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