StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs by Kévin Da Silva, Nicolas Pons, Magali Berland, Florian Plaza Oñate, Mathieu Almeida, Pierre Peterlongo

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Bacterial Consumption of T4 Phages by Jean-Jacques Godon, Ariane Bize, Hoang Ngo, Laurent Cauquil, Mathieu Almeida, Marie-Agnès Petit, Olivier Zemb

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Benchmarking second and third-generation sequencing platforms for microbial metagenomics by Victoria Meslier, Benoit Quinquis, Kévin Da Silva, Florian Plaza Oñate, Nicolas Pons, Hugo Roume, Mircea Podar, Mathieu Almeida

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Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS. by Godfrey Bwire, David A Sack, Mathieu Almeida, Shan Li, Joseph B Voeglein, Amanda Kay Debes, Atek Kagirita, Ambrose Wabwire Buyinza, Christopher Garimoi Orach, O Colin Stine

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Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing. by Marcelino Garrine, Inácio Mandomando, Delfino Vubil, Tacilta Nhampossa, Sozinho Acacio, Shan Li, Joseph N Paulson, Mathieu Almeida, Daryl Domman, Nicholas R Thomson, Pedro Alonso, Oscar Colin Stine

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Evaluation of an Adapted Semi-Automated DNA Extraction for Human Salivary Shotgun Metagenomics by Victoria Meslier, Elisa Menozzi, Aymeric David, Christian Morabito, Sara Lucas Del Pozo, Alexandre Famechon, Janet North, Benoit Quinquis, Sofia Koletsi, Jane Macnaughtan, Roxana Mezabrovschi, S. Dusko Ehrlich, Anthony H. V. Schapira, Mathieu Almeida

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Three transmission events of Vibrio cholerae O1 into Lusaka, Zambia by John Mwaba, Amanda K. Debes, Kelsey N. Murt, Patrick Shea, Michelo Simuyandi, Natasha Laban, Katayi Kazimbaya, Caroline Chisenga, Shan Li, Mathieu Almeida, Jacquelyn S. Meisel, Aaron Shibemba, Timothy Kantenga, Victor Mukonka, Geoffrey Kwenda, David A. Sack, Roma Chilengi, O. Colin Stine

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Genetic relatedness of Vibrio cholerae isolates within and between households during outbreaks in Dhaka, Bangladesh by Christine Marie George, Mahamud Rashid, Mathieu Almeida, K. M. Saif-Ur-Rahman, Shirajum Monira, Md. Sazzadul Islam Bhuyian, Khaled Hasan, Toslim T. Mahmud, Shan Li, Jessica Brubaker, Jamie Perin, Zillur Rahman, Munshi Mustafiz, David A. Sack, R. Bradley Sack, Munirul Alam, O. Colin Stine

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Transient colonizing microbes promote gut dysbiosis and functional impairment by Sunjae Lee, Victoria Meslier, Gholamreza Bidkhori, Fernando Garcia-Guevara, Lucie Etienne-Mesmin, Frederick Clasen, Junseok Park, Florian Plaza Oñate, Haizhuang Cai, Emmanuelle Le Chatelier, Nicolas Pons, Marcela Pereira, Maike Seifert, Fredrik Boulund, Lars Engstrand, Doheon Lee, Gordon Proctor, Adil Mardinoglu, Stéphanie Blanquet-Diot, David Moyes, Mathieu Almeida, S. Dusko Ehrlich, Mathias Uhlen, Saeed Shoaie

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A Data Integration Multi-Omics Approach to Study Calorie Restriction-Induced Changes in Insulin Sensitivity by Maria Carlota Dao, Nataliya Sokolovska, Rémi Brazeilles, Séverine Affeldt, Véronique Pelloux, Edi Prifti, Edi Prifti, Julien Chilloux, Eric O. Verger, Brandon D. Kayser, Judith Aron-Wisnewsky, Judith Aron-Wisnewsky, Farid Ichou, Estelle Pujos-Guillot, Lesley Hoyles, Lesley Hoyles, Catherine Juste, Joël Doré, Marc-Emmanuel Dumas, Salwa W. Rizkalla, Bridget A. Holmes, Jean-Daniel Zucker, Jean-Daniel Zucker, Karine Clément, Karine Clément, The MICRO-Obes Consortium, Aurélie Cotillard, Sean P. Kennedy, Nicolas Pons, Emmanuelle Le Chatelier, Mathieu Almeida, Benoit Quinquis, Nathalie Galleron, Jean-Michel Batto, Pierre Renault, Stanislav Dusko Ehrlich, Hervé Blottière, Marion Leclerc, Tomas de Wouters, Patricia Lepage

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Personalised human albumin in patients with cirrhosis and ascites: design and rationale for the ALB-TRIAL - a randomised clinical biomarker validation trial by Torben Hansen, Pere Ginès, Wim Laleman, Peer Bork, Vishal C Patel, Debbie Shawcross, Robert Schierwagen, Camila Alvarez-Silva, Florence Servant, Jonel Trebicka, Benjamin Lelouvier, Manimozhiyan Arumugam, Ed J Kuijper, Frank Erhard Uschner, Michael Praktiknjo, Mária Papp, Saeed Shoaie, Michael Kühn, Maja Thiele, Paolo Angeli, Joan Claria, Vicente Arroyo, Manolo Laiola, Benoit Quinquis, Sabine Klein, Minneke J Coenraad, François Fenaille, Debbie Lindsay Shawcross, Wenyi Gu, Adria Juanola, Elisa Pose, Aleksander Krag, Ivica Letunic, Alain Pruvost, Hervé M Blottière, Nathalie Galleron, Cristina López-Vicario, Peter V Treit, Matthias Mann, Jelle Matthijnssens, Mark J W Mcphail, Philipp E Geyer, Hans Olav Melberg, Stefanie Kandels, Cristina Sánchez-Garrido, Florence A Castelli, Christophe Junot, Lars Asphaug, Mads Israelsen, Helene Bæk Juel, Nikolaj Torp, Minneke Coenraad, Marko Korenjak, Ferran Aguilar-Parera, Patricia Sierra-Casas, Anna Bosch-Comas, David Tornai, Boglarka Balogh, Katrine Holtz Thorhauge, Casper Sahl Poulsen, Thea Van Rossum, Suguru Nishijima, Marisa I Keller, Diënty H M Hazenbrink, Sylvain Dechaumet, Sebastian D Burz, Emeline Chu-Van, Etienne Thévenot, Florian A Rosenberger, Sebastian Van Blerk, Amirouche Ouzerdine, Alain Roulet, Jean-Louis-Marie Insonere, Céline Serres, Mathieu Almeida, Florence Thirion, Camille Champion, Chaima Ezzine, Célia Chamignon, Nicolas Lapaque, Mamadou Gabou Thiam, Lore Van Espen, Quinten R Ducarmon, Annelotte GC Broekhoven, Susan Fischer, Romy Zwittink, Itziar De Lecuona, Giulio Rosati, Celia Fuentes-Chust, Arben Merkoçi, Massimo Urban, José Alfonso Marrugo-Ramirez, Ameli Schwalber, Lindsey Ann Edwards, Victoria Tatiana Kronsten, David Moyes, Azadeh Harzandi, Jordi Gratacós-Ginès, Martina Pérez-Guasch, Miriam Pellón, Bryan Contreras, Max Brol, Manfred Fobker, Renata Antonina Feuerborn

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