Evolution of increased positive charge on the SARS-CoV-2 spike protein may be adaptation to human transmission by Matthew Cotten, My V.T. Phan

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SARS-CoV-2 Omicron BA.5 Infections in Vaccinated Persons, Rural Uganda by Joseph Mugisha, Bernard Mpairwe, Robert Newton, Matthew Cotten, My V.T. Phan

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The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences by Avraam Tapinos, Bede Constantinides, My V. T. Phan, Samaneh Kouchaki, Matthew Cotten, David L. Robertson

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Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm. by Matthew Cotten, Bas Oude Munnink, Marta Canuti, Martin Deijs, Simon J Watson, Paul Kellam, Lia van der Hoek

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Evaluating the performance of tools used to call minority variants from whole genome short-read data [version 2; referees: 2 approved] by Khadija Said Mohammed, Nelson Kibinge, Pjotr Prins, Charles N. Agoti, Matthew Cotten, D.J. Nokes, Samuel Brand, George Githinji

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Zika virus outbreak and the case for building effective and sustainable rapid diagnostics laboratory capacity globally by Alimuddin Zumla, Ian Goodfellow, Francis Kasolo, Francine Ntoumi, Philippe Buchy, Matthew Bates, Esam I Azhar, Matthew Cotten, Eskild Petersen

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Correction to: Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia by Everlyn Kamau, John W. Oketch, Zaydah R. de Laurent, My V. T. Phan, Charles N. Agoti, D. James Nokes, Matthew Cotten

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Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia by Everlyn Kamau, John W. Oketch, Zaydah R. de Laurent, My V. T. Phan, Charles N. Agoti, D. James Nokes, Matthew Cotten

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Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules. by Kieran D Lamb, Martha M Luka, Megan Saathoff, Richard J Orton, My V T Phan, Matthew Cotten, Ke Yuan, David L Robertson

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Identification of missed viruses by metagenomic sequencing of clinical respiratory samples from Kenya by My V. T. Phan, Charles N. Agoti, Patrick K. Munywoki, Grieven P. Otieno, Mwanajuma Ngama, Paul Kellam, Matthew Cotten, D. James Nokes

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Entamoeba and Giardia parasites implicated as hosts of CRESS viruses by Cormac M. Kinsella, Aldert Bart, Martin Deijs, Patricia Broekhuizen, Joanna Kaczorowska, Maarten F. Jebbink, Tom van Gool, Matthew Cotten, Lia van der Hoek

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Spike Protein Cleavage-Activation in the Context of the SARS-CoV-2 P681R Mutation: an Analysis from Its First Appearance in Lineage A.23.1 Identified in Uganda by Bailey Lubinski, Laura E. Frazier, My V. T. Phan, Daniel L. Bugembe, Jessie L. Cunningham, Tiffany Tang, Susan Daniel, Matthew Cotten, Javier A. Jaimes, Gary R. Whittaker

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Optimisation and Validation of a conventional ELISA and cut-offs for detecting and quantifying anti-SARS-CoV-2 Spike, RBD, and Nucleoprotein IgG, IgM, and IgA antibodies in Uganda by Gerald Kevin Oluka, Gerald Kevin Oluka, Patricia Namubiru, Laban Kato, Violet Ankunda, Ben Gombe, Matthew Cotten, Matthew Cotten, The COVID-19 Immunoprofiling Team, The COVID-19 Immunoprofiling Team, Monica Musenero, Pontiano Kaleebu, Pontiano Kaleebu, Julie Fox, Jennifer Serwanga, Jennifer Serwanga, Claire Baine, Jackson Sembera, Susan Mugaba, Christine Hermilia Akoli, Geoffrey Odoch, Deus Mwesigwa, Peter Ejou, Joseph Ssebwana Katende

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Full-Genome Deep Sequencing and Phylogenetic Analysis of Novel Human Betacoronavirus by Matthew Cotten, Tommy T. Lam, Simon J. Watson, Anne L. Palser, Velislava Petrova, Paul Grant, Oliver G. Pybus, Andrew Rambaut, Yi Guan, Deenan Pillay, Paul Kellam, Eleni Nastouli

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HTLV-1 and HIV-2 infection are associated with increased mortality in a rural West African community. by Carla van Tienen, Maarten Schim van der Loeff, Ingrid Peterson, Matthew Cotten, Sören Andersson, Birgitta Holmgren, Tim Vincent, Thushan de Silva, Sarah Rowland-Jones, Peter Aaby, Hilton Whittle

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Author Correction: Setting a baseline for global urban virome surveillance in sewage by David F. Nieuwenhuijse, Bas B. Oude Munnink, My V. T. Phan, the Global Sewage Surveillance project consortium, Patrick Munk, Shweta Venkatakrishnan, Frank M. Aarestrup, Matthew Cotten, Marion P. G. Koopmans

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Establishing farm dust as a useful viral metagenomic surveillance matrix by Kirsty T. T. Kwok, Myrna M. T. de Rooij, Aniek B. Messink, Inge M. Wouters, Lidwien A. M. Smit, Matthew Cotten, Dick J. J. Heederik, Marion P. G. Koopmans, My V. T. Phan

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Main Routes of Entry and Genomic Diversity of SARS-CoV-2, Uganda by Daniel Lule Bugembe, John Kayiwa, My V.T. Phan, Phiona Tushabe, Stephen Balinandi, Beatrice Dhaala, Jonas Lexow, Henry Mwebesa, Jane Aceng, Henry Kyobe, Deogratius Ssemwanga, Julius Lutwama, Pontiano Kaleebu, Matthew Cotten

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Molecular epidemiology of endemic human T-lymphotropic virus type 1 in a rural community in Guinea-Bissau. by Carla van Tienen, Thushan I de Silva, Luiz Carlos Junior Alcantara, Clayton O Onyango, Sheikh Jarju, Nato Gonçalves, Tim Vincent, Peter Aaby, Hilton Whittle, Maarten Schim van der Loeff, Matthew Cotten

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Identification of a Novel Human Rhinovirus C Type by Antibody Capture VIDISCA-454 by Seyed Mohammad Jazaeri Farsani, Bas B. Oude Munnink, Marta Canuti, Martin Deijs, Matthew Cotten, Maarten F. Jebbink, Joost Verhoeven, Paul Kellam, Katherine Loens, Herman Goossens, Margareta Ieven, Lia van der Hoek

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