Runx Transcription Factors in T Cells—What Is Beyond Thymic Development? by Svetlana Korinfskaya, Sreeja Parameswaran, Matthew T. Weirauch, Matthew T. Weirauch, Matthew T. Weirauch, Artem Barski, Artem Barski, Artem Barski

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903 Decoding genome-wide association study (GWAS) hits for lupus using massively parallel reporter assays by Qiang Wang, Matthew T Weirauch, Peter Nigrovic, Xiaoming Lu

Degenerate Pax2 and Senseless binding motifs improve detection of low-affinity sites required for enhancer specificity. by Arya Zandvakili, Ian Campbell, Lisa M Gutzwiller, Matthew T Weirauch, Brian Gebelein

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1502 Genetic predisposition to lupus across ancestries has >300 separable genetic contributions: what we know today by John B Harley, Viktoryia Laurynenka, Leah C Kottyan, Matthew T Weirauch, Kenneth M Kaufman

NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule by Hailu Fu, Haizi Zheng, Xiaoting Chen, Matthew T. Weirauch, Louis J. Muglia, Li Wang, Yaping Liu

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Non-base-contacting residues enable kaleidoscopic evolution of metazoan C2H2 zinc finger DNA binding by Hamed S. Najafabadi, Michael Garton, Matthew T. Weirauch, Sanie Mnaimneh, Ally Yang, Philip M. Kim, Timothy R. Hughes

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Runx1 shapes the chromatin landscape via a cascade of direct and indirect targets. by Matthew R Hass, Daniel Brissette, Sreeja Parameswaran, Mario Pujato, Omer Donmez, Leah C Kottyan, Matthew T Weirauch, Raphael Kopan

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502 The epigenetics of the now known 330 lupus genetic risk loci in two ancestries are independently consonant with causal regulatory mechanisms involving epstein-barr virus (EBV)-... by John B Harley, Viktoryia Laurynenka, Sreeja Parameswaran, Xiaoting Chen, Leah C Kottyan, Matthew T Weirauch, Kenneth M Kaufman, Iouri Chepelev

Nasal DNA methylation differentiates corticosteroid treatment response in pediatric asthma: A pilot study. by Xue Zhang, Jocelyn M Biagini Myers, Veda K Yadagiri, Ashley Ulm, Xiaoting Chen, Matthew T Weirauch, Gurjit K Khurana Hershey, Hong Ji

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4277 Functional consequences of the juvenile idiopathic arthritis risk variant at 1q24.3 by Halima Moncrieffe, Katelyn Dunn, Yongbo Huang, Xiaoting Chen, Carl D. Langefeld, Matthew T. Weirauch, John B. Harley, Leah C. Kottyan, Susan D. Thompson

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Lineage tracing of nuclei in skeletal myofibers uncovers distinct transcripts and interplay between myonuclear populations by Chengyi Sun, Casey O. Swoboda, Fabian Montecino Morales, Cristofer Calvo, Michael J. Petrany, Sreeja Parameswaran, Andrew VonHandorf, Matthew T. Weirauch, Christoph Lepper, Douglas P. Millay

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CASCADE: high-throughput characterization of regulatory complex binding altered by non-coding variants by David Bray, Heather Hook, Rose Zhao, Jessica L. Keenan, Ashley Penvose, Yemi Osayame, Nima Mohaghegh, Xiaoting Chen, Sreeja Parameswaran, Leah C. Kottyan, Matthew T. Weirauch, Trevor Siggers

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Conserved regulatory logic at accessible and inaccessible chromatin during the acute inflammatory response in mammals by Azad Alizada, Nadiya Khyzha, Liangxi Wang, Lina Antounians, Xiaoting Chen, Melvin Khor, Minggao Liang, Kumaragurubaran Rathnakumar, Matthew T. Weirauch, Alejandra Medina-Rivera, Jason E. Fish, Michael D. Wilson

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Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network by Shreyasi Mukherjee, Praneet Chaturvedi, Scott A Rankin, Margaret B Fish, Marcin Wlizla, Kitt D Paraiso, Melissa MacDonald, Xiaoting Chen, Matthew T Weirauch, Ira L Blitz, Ken WY Cho, Aaron M Zorn

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Genome-wide epigenetic profiling and transcriptome analysis in pediatric Obstructive Sleep Apnea: A focus on Black female children by Bala S.C. Koritala, Sreeja Parameswaran, Omer A. Donmez, Carmy Forney, Hope Rowden, Charles A. Moore, Angela L. Duggins, Alexandra Sestito, Brittany A. Leader, Matthew T. Weirauch, Leah C. Kottyan, David F. Smith

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Gli3 utilizes Hand2 to synergistically regulate tissue-specific transcriptional networks by Kelsey H Elliott, Xiaoting Chen, Joseph Salomone, Praneet Chaturvedi, Preston A Schultz, Sai K Balchand, Jeffrey D Servetas, Aimée Zuniga, Rolf Zeller, Brian Gebelein, Matthew T Weirauch, Kevin A Peterson, Samantha A Brugmann

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Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities by Kamesh Narasimhan, Samuel A Lambert, Ally WH Yang, Jeremy Riddell, Sanie Mnaimneh, Hong Zheng, Mihai Albu, Hamed S Najafabadi, John S Reece-Hoyes, Juan I Fuxman Bass, Albertha JM Walhout, Matthew T Weirauch, Timothy R Hughes

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Myeloid Malignancies with Chromosome 5q Deletions Acquire a Dependency on an Intrachromosomal NF-κB Gene Network by Jing Fang, Brenden Barker, Lyndsey Bolanos, Xiaona Liu, Andres Jerez, Hideki Makishima, Susanne Christie, Xiaoting Chen, Dinesh S. Rao, H. Leighton Grimes, Kakajan Komurov, Matthew T. Weirauch, Jose A. Cancelas, Jaroslaw P. Maciejewski, Daniel T. Starczynowski

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A functional mechanism for a non-coding variant near AGTR2 associated with risk for preterm birth by Li Wang, Robert M. Rossi, Xiaoting Chen, Jing Chen, Jilian Runyon, Mehak Chawla, Daniel Miller, Carmy Forney, Arthur Lynch, Xuzhe Zhang, Fansheng Kong, Bo Jacobsson, Leah C. Kottyan, Matthew T. Weirauch, Ge Zhang, Louis J. Muglia

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IRF1 governs the differential interferon-stimulated gene responses in human monocytes and macrophages by regulating chromatin accessibility by Ran Song, Yajing Gao, Igor Dozmorov, Venkat Malladi, Irene Saha, Margaret M. McDaniel, Sreeja Parameswaran, Chaoying Liang, Carlos Arana, Bo Zhang, Benjamin Wakeland, Jinchun Zhou, Matthew T. Weirauch, Leah C. Kottyan, Edward K. Wakeland, Chandrashekhar Pasare

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