“Gene accordions” cause genotypic and phenotypic heterogeneity in clonal populations of Staphylococcus aureus von Darya Belikova, Angelika Jochim, Jeffrey Power, Matthew T. G. Holden, Simon Heilbronner

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Mapping HPV 16 Sub-Lineages in Anal Cancer and Implications for Disease Outcomes von Daniel Guerendiain, Laila Sara Arroyo Mühr, Raluca Grigorescu, Matthew T. G. Holden, Kate Cuschieri

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The Emergence of Successful <named-content content-type="genus-species">Streptococcus pyogenes</named-content> Lineages through Convergent Pathways of Capsule Loss and Recombinatio... von Claire E. Turner, Matthew T. G. Holden, Beth Blane, Carolyne Horner, Sharon J. Peacock, Shiranee Sriskandan

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The impact of recombination on dN/dS within recently emerged bacterial clones. von Santiago Castillo-Ramírez, Simon R Harris, Matthew T G Holden, Miao He, Julian Parkhill, Stephen D Bentley, Edward J Feil

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Turner et al. Reply to “Emergence of the Same Successful Clade among Distinct Populations of <italic toggle="yes">emm</italic>89 <named-content content-type="genus-species">Strepto... von Claire E. Turner, Theresa Lamagni, Matthew T. G. Holden, Sophia David, Michael D. Jones, Laurence Game, Androulla Efstratiou, Shiranee Sriskandan

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HPV status and HPV16 viral load in anal cancer and its association with clinical outcome von Daniel Guerendiain, Raluca Grigorescu, Anna Kirk, Andrew Stevenson, Matthew T. G. Holden, Jiafeng Pan, Kim Kavanagh, Sheila V. Graham, Kate Cuschieri

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Whole Genome Sequencing and Molecular Epidemiology of Clinical Isolates of <i>Staphylococcus aureus</i> from Algeria von Rachida Namoune, Abla Djebbar, Rebecca Mekler, Martin McHugh, Mohammed El Amine Bekara, Arun Decano, Matthew T. G. Holden, Mohammed Sebaihia

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Emergence of a New Highly Successful Acapsular Group A <italic toggle="yes">Streptococcus</italic> Clade of Genotype <italic toggle="yes">emm</italic>89 in the United Kingdom von Claire E. Turner, James Abbott, Theresa Lamagni, Matthew T. G. Holden, Sophia David, Michael D. Jones, Laurence Game, Androulla Efstratiou, Shiranee Sriskandan

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Etiology and antimicrobial susceptibility patterns of bacteria causing pneumonia among adult patients with signs and symptoms of lower respiratory tract infections during the COVID... von Johannes Rukyaa, Martha F. Mushi, Vitus Silago, Prisca Damiano, Katherine Keenan, Wilber Sabiiti, Matthew T. G. Holden, Jeremiah Seni, Stephen E. Mshana

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Pan-Resistome Characterization of Uropathogenic <i>Escherichia coli</i> and <i>Klebsiella pneumoniae</i> Strains Circulating in Uganda and Kenya, Isolated from 2017–2018 von Arun Gonzales Decano, Kerry Pettigrew, Wilber Sabiiti, Derek J. Sloan, Stella Neema, Joel Bazira, John Kiiru, Hellen Onyango, Benon Asiimwe, Matthew T. G. Holden

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Methicillin-resistant Staphylococcus aureus emerged long before the introduction of methicillin into clinical practice von Catriona P. Harkins, Bruno Pichon, Michel Doumith, Julian Parkhill, Henrik Westh, Alexander Tomasz, Herminia de Lencastre, Stephen D. Bentley, Angela M. Kearns, Matthew T. G. Holden

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Mobile-Genetic-Element-Encoded Hypertolerance to Copper Protects <named-content content-type="genus-species">Staphylococcus aureus</named-content> from Killing by Host Phagocytes von Marta Zapotoczna, Gustavo P. Riboldi, Ahmed M. Moustafa, Elizabeth Dickson, Apurva Narechania, Julie A. Morrissey, Paul J. Planet, Matthew T. G. Holden, Kevin J. Waldron, Joan A. Geoghegan

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Genome-wide analysis reveals loci encoding anti-macrophage factors in the human pathogen Burkholderia pseudomallei K96243. von Andrea J Dowling, Paul A Wilkinson, Matthew T G Holden, Michael A Quail, Stephen D Bentley, Julia Reger, Nicholas R Waterfield, Richard W Titball, Richard H Ffrench-Constant

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Bacterial etiology of urinary tract infections in patients treated at Kenyan health facilities and their resistance towards commonly used antibiotics. von Susan Kiiru, John Maina, Japhet Katana, John Mwaniki, Benon B Asiimwe, Stephen E Mshana, Katherine Keenan, Stephen H Gillespie, John Stelling, Matthew T G Holden, HATUA Consortium, John Kiiru

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ICEApl1, an integrative conjugative element related to ICEHin1056, identified in the pig pathogen Actinobacillus pleuropneumoniae von Janine T Bosse, Yanwen Li, Roberto Fernandez Crespo, Roy R Chaudhuri, Jon Rogers, Matthew T G Holden, Duncan Maskell, Alexander W Tucker, Brendan W Wren, Andrew N Rycroft, Paul R Langford

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Superantigenic activity of emm3 Streptococcus pyogenes is abrogated by a conserved, naturally occurring smeZ mutation. von Claire E Turner, Mary Sommerlad, Karen McGregor, Frances J Davies, Bruno Pichon, Deborah L W Chong, Leili Farzaneh, Matthew T G Holden, Brian G Spratt, Androulla Efstratiou, Shiranee Sriskandan

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Routine use of microbial whole genome sequencing in diagnostic and public health microbiology. von Claudio U Köser, Matthew J Ellington, Edward J P Cartwright, Stephen H Gillespie, Nicholas M Brown, Mark Farrington, Matthew T G Holden, Gordon Dougan, Stephen D Bentley, Julian Parkhill, Sharon J Peacock

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Evaluation of risk-based travel policy for the COVID-19 epidemic in Scotland: a population-based surveillance study von Jennifer Bishop, David L Robertson, Alison Smith-Palmer, Samantha Lycett, Matthew T G Holden, Gonzalo Yebra, Christopher Redman, Joseph Hughes, Kirstin Leslie, Isobel McLachlan, Selene Huntley, Sharif Shaaban, Nicolaos Christofidis, Sema Nickbakhsh

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Global Scale Dissemination of ST93: A Divergent Staphylococcus aureus Epidemic Lineage That Has Recently Emerged From Remote Northern Australia von Sebastiaan J. van Hal, Eike J. Steinig, Eike J. Steinig, Patiyan Andersson, Matthew T. G. Holden, Matthew T. G. Holden, Simon R. Harris, Graeme R. Nimmo, Deborah A. Williamson, Helen Heffernan, S. R. Ritchie, Angela M. Kearns, Matthew J. Ellington, Elizabeth Dickson, Herminia de Lencastre, Herminia de Lencastre, Geoffrey W. Coombs, Geoffrey W. Coombs, Stephen D. Bentley, Julian Parkhill, Deborah C. Holt, Phillip M. Giffard, Steven Y. C. Tong, Steven Y. C. Tong

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Genomic Dissection of an Icelandic Epidemic of Respiratory Disease in Horses and Associated Zoonotic Cases von Sigríður Björnsdóttir, Simon R. Harris, Vilhjálmur Svansson, Eggert Gunnarsson, Ólöf G. Sigurðardóttir, Kristina Gammeljord, Karen F. Steward, J. Richard Newton, Carl Robinson, Amelia R. L. Charbonneau, Julian Parkhill, Matthew T. G. Holden, Andrew S. Waller

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