The effects of introgression across thousands of quantitative traits revealed by gene expression in wild tomatoes by Mark S. Hibbins, Matthew W. Hahn

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Determining the probability of hemiplasy in the presence of incomplete lineage sorting and introgression by Mark S Hibbins, Matthew JS Gibson, Matthew W Hahn

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Genomic islands of speciation in Anopheles gambiae. by Thomas L Turner, Matthew W Hahn, Sergey V Nuzhdin

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Very few RNA and DNA sequence differences in the human transcriptome. by Daniel R Schrider, Jean-Francois Gout, Matthew W Hahn

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Gene family evolution across 12 Drosophila genomes. by Matthew W Hahn, Mira V Han, Sang-Gook Han

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Testing the ortholog conjecture with comparative functional genomic data from mammals. by Nathan L Nehrt, Wyatt T Clark, Predrag Radivojac, Matthew W Hahn

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High-resolution phylogenetic and population genetic analysis of microbial communities with RoC-ITS by Douglas B. Rusch, Jie Huang, Chris Hemmerich, Matthew W. Hahn

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Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation. by James B Pease, David C Haak, Matthew W Hahn, Leonie C Moyle

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A multispecies coalescent model for quantitative traits by Fábio K Mendes, Jesualdo A Fuentes-González, Joshua G Schraiber, Matthew W Hahn

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The evolution of mammalian gene families. by Jeffery P Demuth, Tijl De Bie, Jason E Stajich, Nello Cristianini, Matthew W Hahn

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Ancient and recent positive selection transformed opioid cis-regulation in humans. by Matthew V Rockman, Matthew W Hahn, Nicole Soranzo, Fritz Zimprich, David B Goldstein, Gregory A Wray

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Transcriptomic analysis links gene expression to unilateral pollen-pistil reproductive barriers by Amanda K. Broz, Rafael F. Guerrero, April M. Randle, You Soon Baek, Matthew W. Hahn, Patricia A. Bedinger

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Gene copy-number polymorphism caused by retrotransposition in humans. by Daniel R Schrider, Fabio C P Navarro, Pedro A F Galante, Raphael B Parmigiani, Anamaria A Camargo, Matthew W Hahn, Sandro J de Souza

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Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression. by Dan Vanderpool, Bui Quang Minh, Robert Lanfear, Daniel Hughes, Shwetha Murali, R Alan Harris, Muthuswamy Raveendran, Donna M Muzny, Mark S Hibbins, Robert J Williamson, Richard A Gibbs, Kim C Worley, Jeffrey Rogers, Matthew W Hahn

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The Mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates by Lucie A Bergeron, Søren Besenbacher, Tychele Turner, Cyril J Versoza, Richard J Wang, Alivia Lee Price, Ellie Armstrong, Meritxell Riera, Jedidiah Carlson, Hwei-yen Chen, Matthew W Hahn, Kelley Harris, April Snøfrid Kleppe, Elora H López-Nandam, Priya Moorjani, Susanne P Pfeifer, George P Tiley, Anne D Yoder, Guojie Zhang, Mikkel H Schierup

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Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies by Robert M. Waterhouse, Sergey Aganezov, Yoann Anselmetti, Jiyoung Lee, Livio Ruzzante, Maarten J. M. F. Reijnders, Romain Feron, Sèverine Bérard, Phillip George, Matthew W. Hahn, Paul I. Howell, Maryam Kamali, Sergey Koren, Daniel Lawson, Gareth Maslen, Ashley Peery, Adam M. Phillippy, Maria V. Sharakhova, Eric Tannier, Maria F. Unger, Simo V. Zhang, Max A. Alekseyev, Nora J. Besansky, Cedric Chauve, Scott J. Emrich, Igor V. Sharakhov

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Gene content evolution in the arthropods by Gregg W. C. Thomas, Elias Dohmen, Daniel S. T. Hughes, Shwetha C. Murali, Monica Poelchau, Karl Glastad, Clare A. Anstead, Nadia A. Ayoub, Phillip Batterham, Michelle Bellair, Greta J. Binford, Hsu Chao, Yolanda H. Chen, Christopher Childers, Huyen Dinh, Harsha Vardhan Doddapaneni, Jian J. Duan, Shannon Dugan, Lauren A. Esposito, Markus Friedrich, Jessica Garb, Robin B. Gasser, Michael A. D. Goodisman, Dawn E. Gundersen-Rindal, Yi Han, Alfred M. Handler, Masatsugu Hatakeyama, Lars Hering, Wayne B. Hunter, Panagiotis Ioannidis, Joy C. Jayaseelan, Divya Kalra, Abderrahman Khila, Pasi K. Korhonen, Carol Eunmi Lee, Sandra L. Lee, Yiyuan Li, Amelia R. I. Lindsey, Georg Mayer, Alistair P. McGregor, Duane D. McKenna, Bernhard Misof, Mala Munidasa, Monica Munoz-Torres, Donna M. Muzny, Oliver Niehuis, Nkechinyere Osuji-Lacy, Subba R. Palli, Kristen A. Panfilio, Matthias Pechmann, Trent Perry, Ralph S. Peters, Helen C. Poynton, Nikola-Michael Prpic, Jiaxin Qu, Dorith Rotenberg, Coby Schal, Sean D. Schoville, Erin D. Scully, Evette Skinner, Daniel B. Sloan, Richard Stouthamer, Michael R. Strand, Nikolaus U. Szucsich, Asela Wijeratne, Neil D. Young, Eduardo E. Zattara, Joshua B. Benoit, Evgeny M. Zdobnov, Michael E. Pfrender, Kevin J. Hackett, John H. Werren, Kim C. Worley, Richard A. Gibbs, Ariel D. Chipman, Robert M. Waterhouse, Erich Bornberg-Bauer, Matthew W. Hahn, Stephen Richards

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