Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways by Sarah N. Anderson, Gregory J. Zynda, Jawon Song, Zhaoxue Han, Matthew W. Vaughn, Qing Li, Nathan M. Springer

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Repliscan: a tool for classifying replication timing regions by Gregory J. Zynda, Jawon Song, Lorenzo Concia, Emily E. Wear, Linda Hanley-Bowdoin, William F. Thompson, Matthew W. Vaughn

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Epigenomic consequences of immortalized plant cell suspension culture. by Milos Tanurdzic, Matthew W Vaughn, Hongmei Jiang, Tae-Jin Lee, R Keith Slotkin, Bryon Sosinski, William F Thompson, R W Doerge, Robert A Martienssen

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Epigenetic natural variation in Arabidopsis thaliana. by Matthew W Vaughn, Milos Tanurdzić, Zachary Lippman, Hongmei Jiang, Robert Carrasquillo, Pablo D Rabinowicz, Neilay Dedhia, W Richard McCombie, Nicolas Agier, Agnès Bulski, Vincent Colot, R W Doerge, Robert A Martienssen

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Spreading of heterochromatin is limited to specific families of maize retrotransposons. by Steven R Eichten, Nathanael A Ellis, Irina Makarevitch, Cheng-Ting Yeh, Jonathan I Gent, Lin Guo, Karen M McGinnis, Xiaoyu Zhang, Patrick S Schnable, Matthew W Vaughn, R Kelly Dawe, Nathan M Springer

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Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots. by Emily E Wear, Jawon Song, Gregory J Zynda, Leigh Mickelson-Young, Chantal LeBlanc, Tae-Jin Lee, David O Deppong, George C Allen, Robert A Martienssen, Matthew W Vaughn, Linda Hanley-Bowdoin, William F Thompson

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Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state. by Tae-Jin Lee, Pete E Pascuzzi, Sharon B Settlage, Randall W Shultz, Milos Tanurdzic, Pablo D Rabinowicz, Margit Menges, Ping Zheng, Dorrie Main, James A H Murray, Bryon Sosinski, George C Allen, Robert A Martienssen, Linda Hanley-Bowdoin, Matthew W Vaughn, William F Thompson

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