Patterns of resistance development with integrase inhibitors in HIV by Jean L Mbisa, Supang A Martin, Patricia A Cane

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Efficient and unbiased metagenomic recovery of RNA virus genomes from human plasma samples by Carmen F. Manso, David F. Bibby, Jean L. Mbisa

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Coevolved Multidrug-Resistant HIV-1 Protease and Reverse Transcriptase Influences Integrase Drug Susceptibility and Replication Fitness by Supang A. Martin, Patricia A. Cane, Deenan Pillay, Jean L. Mbisa

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De novo assembly of human herpes virus type 1 (HHV-1) genome, mining of non-canonical structures and detection of novel drug-resistance mutations using short- and long-read next ge... by Karamitros, T, Harrison, I, Piorkowska, R, Katzourakis, A, Magiorkinis, G, Mbisa, J

De Novo Assembly of Human Herpes Virus Type 1 (HHV-1) Genome, Mining of Non-Canonical Structures and Detection of Novel Drug-Resistance Mutations Using Short- and Long-Read Next Ge... by Timokratis Karamitros, Ian Harrison, Renata Piorkowska, Aris Katzourakis, Gkikas Magiorkinis, Jean Lutamyo Mbisa

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Impact of interferon-alpha receptor-1 promoter polymorphisms on the transcriptome of the hepatitis B virus-associated hepatocellular carcinoma by Karamitros, T, Papatheodoridis, G, Paraskevis, D, Hatzakis, A, Mbisa, J, Georgopoulou, U, Klenerman, P, Magiorkinis, G

An innovative study design to assess the community effect of interventions to mitigate HIV epidemics using transmission-chain phylodynamics by Magiorkinis, G, Karamitros, T, Vasylyeva, TI, Williams, LD, Mbisa, JL, Hatzakis, A, Paraskevis, D, Friedman, SR

Presence, persistence and effects of pre-treatment HIV-1 drug resistance variants detected using next generation sequencing: A retrospective longitudinal study from rural coastal K... by Hassan, A, Bibby, D, Mwaringa, S, Agutu, C, Ndirangu, K, Sanders, E, Cane, P, Mbisa, J, Berkley, J

Technical Validation of a Hepatitis C Virus Whole Genome Sequencing Assay for Detection of Genotype and Antiviral Resistance in the Clinical Pathway by Carmen F. Manso, David F. Bibby, Kieren Lythgow, Hodan Mohamed, Richard Myers, David Williams, Renata Piorkowska, Yuen T. Chan, Rory Bowden, M. Azim Ansari, M. Azim Ansari, Camilla L. C. Ip, Eleanor Barnes, Daniel Bradshaw, Jean L. Mbisa, Jean L. Mbisa

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Kaposi's Sarcoma Associated-Herpes Virus (KSHV) Seroprevalence in Pregnant Women in South Africa by Malope-Kgokong Babatyi I, MacPhail Patrick, Mbisa Georgina, Ratshikhopha Edith, Maskew Mhairi, Stein Lara, Sitas Freddy, Whitby Denise

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Dynamics of emergence and linkage of HIV reverse transcriptase Q151M MDR complex in children within first-line antiretroviral rollout uncovered by single-genome sequencing by Mbisa, J, Gupta, R, Cane, P, Kabamba, D, Mulenga, V, Kalumbi, M, Chintu, C, Gibb, D, Walker, A, Pillay, D

Identification of the phenotypic, genotypic and fitness correlates of non-B subtype HIV-1 NRTI resistance through longitudinal analysis of children with virological failure in the... by Mbisa, J, Gupta, R, Cane, P, Kabamba, D, Mulenga, V, Kalumbi, M, Chintu, C, Gibb, D, Walker, A, Pillay, D

Impact of Interferon-α Receptor-1 Promoter Polymorphisms on the Transcriptome of the Hepatitis B Virus-Associated Hepatocellular Carcinoma by Timokratis Karamitros, Timokratis Karamitros, George Papatheodoridis, Dimitrios Paraskevis, Angelos Hatzakis, Jean L. Mbisa, Urania Georgopoulou, Paul Klenerman, Gkikas Magiorkinis, Gkikas Magiorkinis

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Enhanced Detection of DNA Viruses in the Cerebrospinal Fluid of Encephalitis Patients Using Metagenomic Next-Generation Sequencing by Carmen F. Manso, David F. Bibby, Hodan Mohamed, David W. G. Brown, David W. G. Brown, Mark Zuckerman, Jean L. Mbisa

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The evolution of HIV-1 reverse transcriptase in route to acquisition of Q151M multi-drug resistance is complex and involves mutations in multiple domains. by Mbisa, J, Gupta, R, Kabamba, D, Mulenga, V, Kalumbi, M, Chintu, C, Parry, C, Gibb, D, Walker, SA, Cane, P, Pillay, D

Geographic variation of the prevalence of Kaposi's sarcoma-associated herpesvirus and risk factors for transmission in women from 8 countries in four continents by Herrero R, Matos E, Lazcano E, Thomas JO, PTH ANH, Shin HR, Hieu N Trong, Sukvirach S, Perez S, Mbisa G, De Sanjose S, Whitby D, Muňoz N, Franceschi S

Presence, persistence and effects of pre-treatment HIV-1 drug resistance variants detected using next generation sequencing: A Retrospective longitudinal study from rural coastal K... by Amin S Hassan, David F Bibby, Shalton M Mwaringa, Clara A Agutu, Kennedy K Ndirangu, Eduard J Sanders, Patricia A Cane, Jean L Mbisa, James A Berkley

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How war and risky sexual behaviours shape the Ukrainian HIV epidemic: A phylogeographic analysis by Vasylyeva, TI, Liulchuk, M, Friedman, SR, Sazonova, I, Faria, NR, Katzourakis, A, Babii, N, Scherbinska, A, Pybus, OG, Smyrnov, P, Mbisa, T, Paraskevis, D, Faria, NR, Magiorkinis, G

The evolution of HIV-1 reverse transcriptase in route to acquisition of Q151M multi-drug resistance is complex and involves mutations in multiple domains by Gibb Diana M, Parry Chris M, Chintu Chifumbe, Kalumbi Moxmalama, Mulenga Veronica, Kabamba Desire, Gupta Ravi K, Mbisa Jean L, Walker Sarah A, Cane Patricia A, Pillay Deenan

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A novel candidate hepatitis C virus genotype 4 subtype identified by next generation sequencing full-genome characterization in a patient from Saudi Arabia by Mariantonietta Di Stefano, Mona H. Ismail, Mona H. Ismail, Thomas Leitner, Giuseppina Faleo, Marwan Jabr Alwazzeh, Marwan Jabr Alwazzeh, Jean Lutamyo Mbisa, Josè Ramon Fiore, Teresa Antonia Santantonio

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