Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1 by Mesirov, Jill P.

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In vivo profiles in malaria are consistent with a novel physiological state by Wirth, Dyann, Daily, Johanna P., Winzeler, Elizabeth, Mesirov, Jill P., Regev, Aviv

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Compression of Structured High-Throughput Sequencing Data by Campagne, Fabien, Dorff, Kevin C., Chambwe, Nyasha, Robinson, James T., Mesirov, Jill P.

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Integrative Genomics Viewer by Robinson, James T., Thorvaldsdóttir, Helga, Winckler, Wendy, Guttman, Mitchell, Getz, Gad, Mesirov, Jill P., Lander, Eric Steven

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Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom by Durand, Neva C., Robinson, James T., Shamim, Muhammad S., Machol, Ido, Aiden, Erez Lieberman, Lander, Eric Steven, Mesirov, Jill P.

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Portraits of breast cancer progression by Alexe, Gabriela, Scanfeld, Daniel, Tamayo, Pablo, Ganesan, Shridar, DeLisi, Charles, Bhanot, Gyan, Dalgin, Gul S., Mesirov, Jill P.

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Prediction of response to therapy with ezatiostat in lower risk myelodysplastic syndrome by Galili, Naomi, Tamayo, Pablo, Brooks, Margarita R., Brown, Gail, Raza, Azra, Mesirov, Jill P., Botvinnik, Olga B., Brooks, Margarita R.

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Molecular adaptations of striatal spiny projection neurons during levodopa-induced dyskinesia by Heiman, Myriam, Heilbut, Adrian, Francardo, Veronica, Kulicke, Ruth, Fenster, Robert, Kolaczyk, Eric D., Mesirov, Jill P., Surmeier, Dalton J., Cenci, M. Angela, Greengard, Paul

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Control of Huntington’s Disease-Associated Phenotypes by the Striatum-Enriched Transcription Factor Foxp2 by Carmona, Vitor, Heilbut, Adrian, Sittler, Annie, Pereira de Almeida, Luís, Mesirov, Jill P., Gao, Fan, Kolaczyk, Eric D., Hachigian, Lea, Fenster, Robert, Kulicke, Ruth, Heiman, Myriam

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Transcriptional Profiling of Plasmodium falciparum Parasites from Patients with Severe Malaria Identifies Distinct Low vs. High Parasitemic Clusters by Regev, Aviv, Mesirov, Jill P., Milner, Danny A., Pochet, Nathalie, Krupka, Malkie, Williams, Chris, Seydel, Karl, Taylor, Terrie E., Peer, Yves Van de, Wirth, Dyann, Daily, Johanna P.

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MicroSCALE Screening Reveals Genetic Modifiers of Therapeutic Response in Melanoma by Wood, Kris C., Konieczkowski, David J., Johannessen, Cory M., Boehm, Jesse S., Tamayo, Pablo, Botvinnik, Olga B., Mesirov, Jill P., Hahn, William C., Root, David E., Garraway, Levi A., Sabatini, David

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Automated high-dimensional flow cytometric data analysis by Pyne, Saumyadipta, Hu, Xinli, Wang, Kui, Rossin, Elizabeth, Lin, Tsung-I, Maier, Lisa M., Baecher-Allan, Clare, McLachlan, Geoffrey J., Tamayo, Pablo, Hafler, David A., De Jager, Philip L., Mesirov, Jill P.

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GenePattern flow cytometry suite by Spidlen, Josef, Barsky, Aaron, Breuer, Karin, Carr, Peter, Nazaire, Marc-Danie, Hill, Barbara, Qian, Yu, Liefeld, Ted, Reich, Michael, Wilkinson, Peter, Scheuermann, Richard H., Sekaly, Rafick-Pierre, Brinkman, Ryan R., Mesirov, Jill P.

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MYC regulation of a "poor-prognosis" metastatic cancer cell state by Mesirov, Jill P., Wolfer, Anita, Wittner, Ben S., Irimia, Daniel, Flavin, Richard J., Lupien, Mathieu, Gunawardane, Ruwanthi N., Meyer, Clifford A., Lightcap, Eric S., Tamayo, Pablo, Liu, X. Shirley, Shioda, Toshi, Toner, Mehmet, Loda, Massimo, Brown, Myles, Brugge, Joan S., Ramaswamy, Sridhar

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Cancer Vulnerabilities Unveiled by Genomic Loss by Nijhawan, Deepak, Zack, Travis I., Ren, Yin, Strickland, Matthew R., Lamothe, Rebecca, Schumacher, Steven E., Tsherniak, Aviad, Besche, Henrike C., Rosenbluh, Joseph, Shehata, Shyemaa, Cowley, Glenn S., Weir, Barbara A., Goldberg, Alfred L., Mesirov, Jill P., Root, David E., Beroukhim, Rameen, Hahn, William C., Bhatia, Sangeeta N

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Targeted Tumor-Penetrating siRNA Nanocomplexes for Credentialing the Ovarian Cancer Target ID4 by Ren, Yin, von Maltzhan, Geoffrey, Agrawal, Amit, Mesirov, Jill P., Lo, Justin H., Cheung, Hiu Wing, Cowley, Glenn S., Weir, Barbara A., Boehm, Jesse S., Tamayo, Pablo, Karst, Alison M., Liu, Joyce F., Hirsch, Michelle S., Drapkin, Ronny, Root, David E., Fogal, Valentina, Ruoslahti, Erkki, Hahn, William C., Bhatia, Sangeeta N

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Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace by Qu, Kun, Garamszegi, Sara, Wu, Felix, Thorvaldsdottir, Helga, Liefeld, Ted, Ocana, Marco, Pochet, Nathalie, Robinson, James T, Demchak, Barry, Hull, Tim, Ben-Artzi, Gil, Blankenberg, Daniel, Barber, Galt P, Lee, Brian T, Kuhn, Robert M, Nekrutenko, Anton, Segal, Eran, Ideker, Trey, Reich, Michael, Chang, Howard Y, Mesirov, Jill P, Borges-Rivera, Diego Ramon, Regev, Aviv

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DiSCoVERing Innovative Therapies for Rare Tumors: Combining Genetically Accurate Disease Models with In Silico Analysis to Identify Novel Therapeutic Targets by Hanaford, A. R., Price, A., Kahlert, U. D., Maciaczyk, J., Nikkhah, G., Dancik, V., Seashore-Ludlow, B., Viswanathan, V., Rees, M. G., Eberhart, C. G., Raabe, E. H., Archer, Tenley, Kim, Jong Wook, Ehrenberger, Tobias, Clemons, Paul A, Stewart, Michelle L., Shamji, Alykhan, Fraenkel, Ernest, Pomeroy, Scott L., Tamayo, Pablo, Schreiber, Stuart L., Mesirov, Jill P.

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Systematic investigation of genetic vulnerabilities across cancer cell lines reveals lineage-specific dependencies in ovarian cancer by Ren, Yin, Meyerson, Matthew L., Drapkin, Ronny, Cheung, Hiu Wing, Cowley, Glenn S., Weir, Barbara A., Boehm, Jesse S., Rusin, Scott, Scott, Justine A., East, Alexandra, Ali, Levi D., Lizotte, Patrick H., Wong, Terence C., Jiang, Guozhi, Hsiao, Jessica, Mermel, Craig H., Getz, Gad, Barretina, Jordi, Gopal, Shuba, Tamayo, Pablo, Gould, Joshua, Tsherniak, Aviad, Stransky, Nicolas, Luo, Biao, Mesirov, Jill P., Garraway, Levi A., Lander, Eric S., Root, David E., Hahn, William C., Bhatia, Sangeeta N

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