Bivalent-like chromatin markers are predictive for transcription start site distribution in human. by Zhihua Zhang, Xiaotu Ma, Michael Q Zhang

Get full text

Major chromosomal breakpoint intervals in breast cancer tumors co-localize with differentially methylated regions. by Man-Hung Eric eTang, Man-Hung Eric eTang, Vinay eVaradan, Sitharthan eKamalakaran, Michael Q Zhang, Michael Q Zhang, Michael Q Zhang, Nevenka eDimitrova, James eHicks

Get full text

Genome-wide localization of protein-DNA binding and histone modification by a Bayesian change-point method with ChIP-seq data. by Haipeng Xing, Yifan Mo, Will Liao, Michael Q Zhang

Get full text

Genome wide mapping of Foxo1 binding-sites in murine T lymphocytes by Will Liao, Weiming Ouyang, Michael Q. Zhang, Ming O. Li

Get full text

Putative zinc finger protein binding sites are over-represented in the boundaries of methylation-resistant CpG islands in the human genome. by Shicai Fan, Fang Fang, Xuegong Zhang, Michael Q Zhang

Get full text

Deciphering hierarchical organization of topologically associated domains through change-point testing by Haipeng Xing, Yingru Wu, Michael Q. Zhang, Yong Chen

Get full text

Model-based analysis of chromatin interactions from dCas9-Based CAPTURE-3C-seq. by Yong Chen, Yunfei Wang, Xin Liu, Jian Xu, Michael Q Zhang

Get full text

ScaffComb: A Phenotype‐Based Framework for Drug Combination Virtual Screening in Large‐Scale Chemical Datasets by Zhaofeng Ye, Fengling Chen, Jiangyang Zeng, Juntao Gao, Michael Q. Zhang

Get full text

ChIPr: accurate prediction of cohesin-mediated 3D genome organization from 2D chromatin features by Ahmed Abbas, Khyati Chandratre, Yunpeng Gao, Jiapei Yuan, Michael Q. Zhang, Ram S. Mani

Get full text

2SigFinder: the combined use of small-scale and large-scale statistical testing for genomic island detection from a single genome by Rui Kong, Xinnan Xu, Xiaoqing Liu, Pingan He, Michael Q. Zhang, Qi Dai

Get full text

Single-cell alternative polyadenylation analysis delineates GABAergic neuron types by Yang Yang, Anirban Paul, Thao Nguyen Bach, Z. Josh Huang, Michael Q. Zhang

Get full text

SPIRAL: integrating and aligning spatially resolved transcriptomics data across different experiments, conditions, and technologies by Tiantian Guo, Zhiyuan Yuan, Yan Pan, Jiakang Wang, Fengling Chen, Michael Q. Zhang, Xiangyu Li

Get full text

SOTIP is a versatile method for microenvironment modeling with spatial omics data by Zhiyuan Yuan, Yisi Li, Minglei Shi, Fan Yang, Juntao Gao, Jianhua Yao, Michael Q. Zhang

Get full text

Characterizing microRNA-mediated modulation of gene expression noise and its effect on synthetic gene circuits by Lei Wei, Shuailin Li, Pengcheng Zhang, Tao Hu, Michael Q. Zhang, Zhen Xie, Xiaowo Wang

Get full text

Highly diversified core promoters in the human genome and their effects on gene expression and disease predisposition by Hemant Gupta, Khyati Chandratre, Siddharth Sinha, Teng Huang, Xiaobing Wu, Jian Cui, Michael Q. Zhang, San Ming Wang

Get full text

Histone Deacetylases Positively Regulate Transcription through the Elongation Machinery by Celeste B. Greer, Yoshiaki Tanaka, Yoon Jung Kim, Peng Xie, Michael Q. Zhang, In-Hyun Park, Tae Hoon Kim

Get full text

ModuleRole: a tool for modulization, role determination and visualization in protein-protein interaction networks. by Guipeng Li, Ming Li, Yiwei Zhang, Dong Wang, Rong Li, Roger Guimerà, Juntao Tony Gao, Michael Q Zhang

Get full text

Study of FoxA pioneer factor at silent genes reveals Rfx-repressed enhancer at Cdx2 and a potential indicator of esophageal adenocarcinoma development. by Jason A Watts, Chaolin Zhang, Andres J Klein-Szanto, Jay D Kormish, Jian Fu, Michael Q Zhang, Kenneth S Zaret

Get full text

Reconstructing cell cycle pseudo time-series via single-cell transcriptome data by Zehua Liu, Huazhe Lou, Kaikun Xie, Hao Wang, Ning Chen, Oscar M. Aparicio, Michael Q. Zhang, Rui Jiang, Ting Chen

Get full text

Integrating Hi-C and FISH data for modeling of the 3D organization of chromosomes by Ahmed Abbas, Xuan He, Jing Niu, Bin Zhou, Guangxiang Zhu, Tszshan Ma, Jiangpeikun Song, Juntao Gao, Michael Q. Zhang, Jianyang Zeng

Get full text