Virtual ChIP-seq: predicting transcription factor binding by learning from the transcriptome by Mehran Karimzadeh, Michael M. Hoffman

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DNAmod: the DNA modification database by Ankur Jai Sood, Coby Viner, Michael M. Hoffman

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Segmentation and genome annotation algorithms for identifying chromatin state and other genomic patterns. by Maxwell W Libbrecht, Rachel C W Chan, Michael M Hoffman

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Human papillomavirus integration transforms chromatin to drive oncogenesis by Mehran Karimzadeh, Christopher Arlidge, Ariana Rostami, Mathieu Lupien, Scott V. Bratman, Michael M. Hoffman

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Sensitive and reproducible cell-free methylome quantification with synthetic spike-in controls by Samantha L. Wilson, Shu Yi Shen, Lauren Harmon, Justin M. Burgener, Tim Triche, Jr., Scott V. Bratman, Daniel D. De Carvalho, Michael M. Hoffman

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Exploring the merits of research performance measures that comply with the San Francisco Declaration on Research Assessment and strategies to overcome barriers of adoption: qualita... by Himani Boury, Mathieu Albert, Robert H. C. Chen, James C. L. Chow, Ralph DaCosta, Michael M. Hoffman, Behrang Keshavarz, Pia Kontos, Mary Pat McAndrews, Stephanie Protze, Anna R. Gagliardi

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Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet by Coby Viner, Charles A. Ishak, James Johnson, Nicolas J. Walker, Hui Shi, Marcela K. Sjöberg-Herrera, Shu Yi Shen, Santana M. Lardo, David J. Adams, Anne C. Ferguson-Smith, Daniel D. De Carvalho, Sarah J. Hainer, Timothy L. Bailey, Michael M. Hoffman

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Community consensus on core open science practices to monitor in biomedicine by Kelly D. Cobey, Stefanie Haustein, Jamie Brehaut, Ulrich Dirnagl, Delwen L. Franzen, Lars G. Hemkens, Justin Presseau, Nico Riedel, Daniel Strech, Juan Pablo Alperin, Rodrigo Costas, Emily S. Sena, Thed van Leeuwen, Clare L. Ardern, Isabel O. L. Bacellar, Nancy Camack, Marcos Britto Correa, Roberto Buccione, Maximiliano Sergio Cenci, Dean A. Fergusson, Cassandra Gould van Praag, Michael M. Hoffman, Renata Moraes Bielemann, Ugo Moschini, Mauro Paschetta, Valentina Pasquale, Valeria E. Rac, Dylan Roskams-Edris, Hermann M. Schatzl, Jo Anne Stratton, David Moher

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Community consensus on core open science practices to monitor in biomedicine. by Kelly D Cobey, Stefanie Haustein, Jamie Brehaut, Ulrich Dirnagl, Delwen L Franzen, Lars G Hemkens, Justin Presseau, Nico Riedel, Daniel Strech, Juan Pablo Alperin, Rodrigo Costas, Emily S Sena, Thed van Leeuwen, Clare L Ardern, Isabel O L Bacellar, Nancy Camack, Marcos Britto Correa, Roberto Buccione, Maximiliano Sergio Cenci, Dean A Fergusson, Cassandra Gould van Praag, Michael M Hoffman, Renata Moraes Bielemann, Ugo Moschini, Mauro Paschetta, Valentina Pasquale, Valeria E Rac, Dylan Roskams-Edris, Hermann M Schatzl, Jo Anne Stratton, David Moher

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GA4GH: International policies and standards for data sharing across genomic research and healthcare by Heidi L. Rehm, Angela J.H. Page, Lindsay Smith, Jeremy B. Adams, Gil Alterovitz, Lawrence J. Babb, Maxmillian P. Barkley, Michael Baudis, Michael J.S. Beauvais, Tim Beck, Jacques S. Beckmann, Sergi Beltran, David Bernick, Alexander Bernier, James K. Bonfield, Tiffany F. Boughtwood, Guillaume Bourque, Sarion R. Bowers, Anthony J. Brookes, Michael Brudno, Matthew H. Brush, David Bujold, Tony Burdett, Orion J. Buske, Moran N. Cabili, Daniel L. Cameron, Robert J. Carroll, Esmeralda Casas-Silva, Debyani Chakravarty, Bimal P. Chaudhari, Shu Hui Chen, J. Michael Cherry, Justina Chung, Melissa Cline, Hayley L. Clissold, Robert M. Cook-Deegan, Mélanie Courtot, Fiona Cunningham, Miro Cupak, Robert M. Davies, Danielle Denisko, Megan J. Doerr, Lena I. Dolman, Edward S. Dove, L. Jonathan Dursi, Stephanie O.M. Dyke, James A. Eddy, Karen Eilbeck, Kyle P. Ellrott, Susan Fairley, Khalid A. Fakhro, Helen V. Firth, Michael S. Fitzsimons, Marc Fiume, Paul Flicek, Ian M. Fore, Mallory A. Freeberg, Robert R. Freimuth, Lauren A. Fromont, Jonathan Fuerth, Clara L. Gaff, Weiniu Gan, Elena M. Ghanaim, David Glazer, Robert C. Green, Malachi Griffith, Obi L. Griffith, Robert L. Grossman, Tudor Groza, Jaime M. Guidry Auvil, Roderic Guigó, Dipayan Gupta, Melissa A. Haendel, Ada Hamosh, David P. Hansen, Reece K. Hart, Dean Mitchell Hartley, David Haussler, Rachele M. Hendricks-Sturrup, Calvin W.L. Ho, Ashley E. Hobb, Michael M. Hoffman, Oliver M. Hofmann, Petr Holub, Jacob Shujui Hsu, Jean-Pierre Hubaux, Sarah E. Hunt, Ammar Husami, Julius O. Jacobsen, Saumya S. Jamuar, Elizabeth L. Janes, Francis Jeanson, Aina Jené, Amber L. Johns, Yann Joly, Steven J.M. Jones, Alexander Kanitz, Kazuto Kato, Thomas M. Keane, Kristina Kekesi-Lafrance, Jerome Kelleher, Giselle Kerry, Seik-Soon Khor, Bartha M. Knoppers, Melissa A. Konopko, Kenjiro Kosaki, Martin Kuba, Jonathan Lawson, Rasko Leinonen, Stephanie Li, Michael F. Lin, Mikael Linden, Xianglin Liu, Isuru Udara Liyanage, Javier Lopez, Anneke M. Lucassen, Michael Lukowski, Alice L. Mann, John Marshall, Michele Mattioni, Alejandro Metke-Jimenez, Anna Middleton, Richard J. Milne, Fruzsina Molnár-Gábor, Nicola Mulder, Monica C. Munoz-Torres, Rishi Nag, Hidewaki Nakagawa, Jamal Nasir, Arcadi Navarro, Tristan H. Nelson, Ania Niewielska, Amy Nisselle, Jeffrey Niu, Tommi H. Nyrönen, Brian D. O’Connor, Sabine Oesterle, Soichi Ogishima, Vivian Ota Wang, Laura A.D. Paglione, Emilio Palumbo, Helen E. Parkinson, Anthony A. Philippakis, Angel D. Pizarro, Andreas Prlic, Jordi Rambla, Augusto Rendon, Renee A. Rider, Peter N. Robinson, Kurt W. Rodarmer, Laura Lyman Rodriguez, Alan F. Rubin, Manuel Rueda, Gregory A. Rushton, Rosalyn S. Ryan, Gary I. Saunders, Helen Schuilenburg, Torsten Schwede, Serena Scollen, Alexander Senf, Nathan C. Sheffield, Neerjah Skantharajah, Albert V. Smith, Heidi J. Sofia, Dylan Spalding, Amanda B. Spurdle, Zornitza Stark, Lincoln D. Stein, Makoto Suematsu, Patrick Tan, Jonathan A. Tedds, Alastair A. Thomson, Adrian Thorogood, Timothy L. Tickle, Katsushi Tokunaga, Juha Törnroos, David Torrents, Sean Upchurch, Alfonso Valencia, Roman Valls Guimera, Jessica Vamathevan, Susheel Varma, Danya F. Vears, Coby Viner, Craig Voisin, Alex H. Wagner, Susan E. Wallace, Brian P. Walsh, Marc S. Williams, Eva C. Winkler, Barbara J. Wold, Grant M. Wood, J. Patrick Woolley, Chisato Yamasaki, Andrew D. Yates, Christina K. Yung, Lyndon J. Zass, Ksenia Zaytseva, Junjun Zhang, Peter Goodhand, Kathryn North, Ewan Birney

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