VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank by Ryan C. Shean, Negar Makhsous, Graham D. Stoddard, Michelle J. Lin, Alexander L. Greninger

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Comparative genomics and full-length Tprk profiling of Treponema pallidum subsp. pallidum reinfection. by Amin Addetia, Lauren C Tantalo, Michelle J Lin, Hong Xie, Meei-Li Huang, Christina M Marra, Alexander L Greninger

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Estimation of Full-Length TprK Diversity in <named-content content-type="genus-species">Treponema pallidum</named-content> subsp. <italic toggle="yes">pallidum</italic> by Amin Addetia, Michelle J. Lin, Quynh Phung, Hong Xie, Meei-Li Huang, Giulia Ciccarese, Ivano Dal Conte, Marco Cusini, Francesco Drago, Lorenzo Giacani, Alexander L. Greninger

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Longitudinal TprK profiling of in vivo and in vitro-propagated Treponema pallidum subsp. pallidum reveals accumulation of antigenic variants in absence of immune pressure. by Michelle J Lin, Austin M Haynes, Amin Addetia, Nicole A P Lieberman, Quynh Phung, Hong Xie, Tien V Nguyen, Barbara J Molini, Sheila A Lukehart, Lorenzo Giacani, Alexander L Greninger

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Host–pathogen dynamics in longitudinal clinical specimens from patients with COVID-19 by Michelle J. Lin, Victoria M. Rachleff, Hong Xie, Lasata Shrestha, Nicole A. P. Lieberman, Vikas Peddu, Amin Addetia, Amanda M. Casto, Nathan Breit, Patrick C. Mathias, Meei-Li Huang, Keith R. Jerome, Alexander L. Greninger, Pavitra Roychoudhury

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Molecular Features of the Measles Virus Viral Fusion Complex That Favor Infection and Spread in the Brain by Cyrille Mathieu, Francesca T. Bovier, Marion Ferren, Nicole A. P. Lieberman, Camilla Predella, Alexandre Lalande, Vikas Peddu, Michelle J. Lin, Amin Addetia, Achchhe Patel, Victor Outlaw, Barbara Corneo, N. Valerio Dorrello, Thomas Briese, Diana Hardie, Branka Horvat, Anne Moscona, Alexander L. Greninger, Matteo Porotto

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Oral prodrug of remdesivir parent GS-441524 is efficacious against SARS-CoV-2 in ferrets by Robert M. Cox, Josef D. Wolf, Carolin M. Lieber, Julien Sourimant, Michelle J. Lin, Darius Babusis, Venice DuPont, Julie Chan, Kim T. Barrett, Diane Lye, Rao Kalla, Kwon Chun, Richard L. Mackman, Chengjin Ye, Tomas Cihlar, Luis Martinez-Sobrido, Alexander L. Greninger, John P. Bilello, Richard K. Plemper

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De novo emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: a case report by Shiv Gandhi, Jonathan Klein, Alexander J. Robertson, Mario A. Peña-Hernández, Michelle J. Lin, Pavitra Roychoudhury, Peiwen Lu, John Fournier, David Ferguson, Shah A. K. Mohamed Bakhash, M. Catherine Muenker, Ariktha Srivathsan, Elsio A. Wunder, Nicholas Kerantzas, Wenshuai Wang, Brett Lindenbach, Anna Pyle, Craig B. Wilen, Onyema Ogbuagu, Alexander L. Greninger, Akiko Iwasaki, Wade L. Schulz, Albert I. Ko

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