Platforms for Optogenetic Stimulation and Feedback Control by Sant Kumar, Mustafa Khammash

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The Internal Model Principle for Biomolecular Control Theory by Ankit Gupta, Mustafa Khammash

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Likelihood-free nested sampling for parameter inference of biochemical reaction networks. by Jan Mikelson, Mustafa Khammash

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Frequency spectra and the color of cellular noise by Ankit Gupta, Mustafa Khammash

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Parameter estimation and model selection in computational biology. by Gabriele Lillacci, Mustafa Khammash

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Implementation Considerations, Not Topological Differences, Are the Main Determinants of Noise Suppression Properties in Feedback and Incoherent Feedforward Circuits. by Gentian Buzi, Mustafa Khammash

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Analysis of stochastic strategies in bacterial competence: a master equation approach. by Sandra H Dandach, Mustafa Khammash

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A scalable computational framework for establishing long-term behavior of stochastic reaction networks. by Ankit Gupta, Corentin Briat, Mustafa Khammash

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Rapid prototyping and design of cybergenetic single-cell controllers by Sant Kumar, Marc Rullan, Mustafa Khammash

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DeepCME: A deep learning framework for computing solution statistics of the chemical master equation. by Ankit Gupta, Christoph Schwab, Mustafa Khammash

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Exploiting natural chemical photosensitivity of anhydrotetracycline and tetracycline for dynamic and setpoint chemo-optogenetic control by Armin Baumschlager, Marc Rullan, Mustafa Khammash

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A hierarchy of biomolecular proportional-integral-derivative feedback controllers for robust perfect adaptation and dynamic performance by Maurice Filo, Sant Kumar, Mustafa Khammash

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Dynamic cybergenetic control of bacterial co-culture composition via optogenetic feedback by Joaquín Gutiérrez Mena, Sant Kumar, Mustafa Khammash

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Direct solution of the Chemical Master Equation using quantized tensor trains. by Vladimir Kazeev, Mustafa Khammash, Michael Nip, Christoph Schwab

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A cybergenetic framework for engineering intein-mediated integral feedback control systems by Stanislav Anastassov, Maurice Filo, Ching-Hsiang Chang, Mustafa Khammash

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Cell-in-the-loop pattern formation with optogenetically emulated cell-to-cell signaling by Melinda Liu Perkins, Dirk Benzinger, Murat Arcak, Mustafa Khammash

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Spatial stochastic dynamics enable robust cell polarization. by Michael J Lawson, Brian Drawert, Mustafa Khammash, Linda Petzold, Tau-Mu Yi

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Automated optogenetic feedback control for precise and robust regulation of gene expression and cell growth by Andreas Milias-Argeitis, Marc Rullan, Stephanie K. Aoki, Peter Buchmann, Mustafa Khammash

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Characterization and mitigation of gene expression burden in mammalian cells by Timothy Frei, Federica Cella, Fabiana Tedeschi, Joaquín Gutiérrez, Guy-Bart Stan, Mustafa Khammash, Velia Siciliano

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Temporal perturbation of ERK dynamics reveals network architecture of FGF2/MAPK signaling by Yannick Blum, Jan Mikelson, Maciej Dobrzyński, Hyunryul Ryu, Marc‐Antoine Jacques, Noo Li Jeon, Mustafa Khammash, Olivier Pertz

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