The evolutionary and transmission dynamics of HIV-1 CRF08_BC. by Xingguang Li, Nídia S Trovão

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When Pigs Fly: Pandemic influenza enters the 21st century. by Nídia S Trovão, Martha I Nelson

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Insect-specific viruses in the Parvoviridae family: Genetic lineage characterization and spatiotemporal dynamics of the recently established Brevihamaparvovirus genus by Paulo Morais, Nídia S. Trovão, Ana B. Abecasis, Ricardo Parreira

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Readdressing the genetic diversity and taxonomy of the Mesoniviridae family, as well as its relationships with other nidoviruses and putative mesonivirus-like viral sequences by Paulo Morais, Nídia S. Trovão, Ana B. Abecasis, Ricardo Parreira

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Novel hepatitis B virus subgenotype A8 and quasi-subgenotype D12 in African–Belgian chronic carriers by Marijn Thijssen, Nídia Sequeira Trovão, Thomas Mina, Piet Maes, Mahmoud Reza Pourkarim

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The Evolutionary Dynamics of Influenza A Viruses Circulating in Mallards in Duck Hunting Preserves in Maryland, USA by Nídia S. Trovão, Jacqueline M. Nolting, Richard D. Slemons, Martha I. Nelson, Andrew S. Bowman

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Comparative evolution of influenza A virus H1 and H3 head and stalk domains across host species by Nidia S. Trovão, Sairah M. Khan, Philippe Lemey, Martha I. Nelson, Joshua L. Cherry

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Origins and Evolution of Seasonal Human Coronaviruses by James R. Otieno, Joshua L. Cherry, David J. Spiro, Martha I. Nelson, Nídia S. Trovão

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Quantifying Next Generation Sequencing Sample Pre-Processing Bias in HIV-1 Complete Genome Sequencing by Bram Vrancken, Nídia Sequeira Trovão, Guy Baele, Eric van Wijngaerden, Anne-Mieke Vandamme, Kristel van Laethem, Philippe Lemey

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Accelerating Bayesian inference of dependency between mixed-type biological traits. by Zhenyu Zhang, Akihiko Nishimura, Nídia S Trovão, Joshua L Cherry, Andrew J Holbrook, Xiang Ji, Philippe Lemey, Marc A Suchard

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Differential impact of COVID-19 non-pharmaceutical interventions on the epidemiological dynamics of respiratory syncytial virus subtypes A and B by Inga Holmdahl, Samantha J. Bents, Rachel E. Baker, Jean-Sebastien Casalegno, Nídia Sequeira Trovão, Sang Woo Park, Jessica E. Metcalf, Cécile Viboud, Bryan Grenfell

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Human-Origin Influenza A(H3N2) Reassortant Viruses in Swine, Southeast Mexico by Martha I. Nelson, Carine K. Souza, Nídia S. Trovão, Andres Diaz, Ignacio Mena, Albert Rovira, Amy L. Vincent, Montserrat Torremorell, Douglas Marthaler, Marie R. Culhane

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Emergence and Evolution of Novel Reassortant Influenza A Viruses in Canines in Southern China by Ying Chen, Nídia S. Trovão, Guojun Wang, Weifeng Zhao, Ping He, Huabo Zhou, Yanning Mo, Zuzhang Wei, Kang Ouyang, Weijian Huang, Adolfo García-Sastre, Martha I. Nelson

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Beyond clinical trials: Evolutionary and epidemiological considerations for development of a universal influenza vaccine. by Cécile Viboud, Katelyn Gostic, Martha I Nelson, Graeme E Price, Amanda Perofsky, Kaiyuan Sun, Nídia Sequeira Trovão, Benjamin J Cowling, Suzanne L Epstein, David J Spiro

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Human Influenza A Virus Hemagglutinin Glycan Evolution Follows a Temporal Pattern to a Glycan Limit by Meghan O. Altman, Matthew Angel, Ivan Košík, Nídia S. Trovão, Seth J. Zost, James S. Gibbs, Lorenzo Casalino, Rommie E. Amaro, Scott E. Hensley, Martha I. Nelson, Jonathan W. Yewdell

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Evolutionary and spatiotemporal analyses reveal multiple introductions and cryptic transmission of SARS-CoV-2 VOC/VOI in Malta by Nidia S. Trovao, Vincent Pan, Chirag Goel, Pilar Gallego-García, Yunxi Liu, Christopher Barbara, Rebecca Borg, Mark Briffa, Chanelle Cilia, Laura Grech, Mario Vassallo, Todd J. Treangen, David Posada, Afshin Beheshti, Joseph Borg, Graziella Zahra

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Origins of the 2009 H1N1 influenza pandemic in swine in Mexico by Ignacio Mena, Martha I Nelson, Francisco Quezada-Monroy, Jayeeta Dutta, Refugio Cortes-Fernández, J Horacio Lara-Puente, Felipa Castro-Peralta, Luis F Cunha, Nídia S Trovão, Bernardo Lozano-Dubernard, Andrew Rambaut, Harm van Bakel, Adolfo García-Sastre

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Sequential viral introductions and spread of BA.1 across Pakistan provinces during the Omicron wave by Ali Raza Bukhari, Javaria Ashraf, Akbar Kanji, Yusra Abdul Rahman, Nídia S. Trovão, Peter M. Thielen, Maliha Yameen, Samiah Kanwar, Waqasuddin Khan, Furqan Kabir, Muhammad Imran Nisar, Brian Merritt, Rumina Hasan, David Spiro, Zeba Rasmussen, Uzma Bashir Aamir, Zahra Hasan

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Ecological divergence of wild birds drives avian influenza spillover and global spread. by Nichola J Hill, Mary Anne Bishop, Nídia S Trovão, Katherine M Ineson, Anne L Schaefer, Wendy B Puryear, Katherine Zhou, Alexa D Foss, Daniel E Clark, Kenneth G MacKenzie, Jonathon D Gass, Laura K Borkenhagen, Jeffrey S Hall, Jonathan A Runstadler

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SARS-CoV-2 antibody prevalence in a pediatric cohort of unvaccinated children in Mérida, Yucatán, México by Guadalupe Ayora-Talavera, Oscar D. Kirstein, Henry Puerta-Guardo, Gloria A. Barrera-Fuentes, Desiree Ortegòn-Abud, Azael Che-Mendoza, Manuel Parra, Fernando Peña-Miranda, Carlos Culquichicon, Norma Pavia-Ruz, Afshin Beheshti, Nídia S. Trovão, Pilar Granja-Pérez, Pablo Manrique-Saide, Gonzalo M. Vazquez-Prokopec, James T. Earnest

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