Host DNA depletion can increase the sensitivity of Mycobacterium spp. detection through shotgun metagenomics in sputum by Nienke A. Kok, Nilay Peker, Leonard Schuele, Jessica L. de Beer, Jessica L. de Beer, John W. A. Rossen, John W. A. Rossen, John W. A. Rossen, Bhanu Sinha, Natacha Couto, Natacha Couto

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Next-generation sequencing in routine clinical microbiology and infectious diseases: an ESGMD-ESGEM ESCMID postgraduate course by Hege Vangstein Aamot, Eric C.J. Claas, Natacha Couto, Henrik Westh, Gilbert Greub, John W.A. Rossen

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The Diversity, Resistance Profiles and Plasmid Content of <i>Klebsiella</i> spp. Recovered from Dairy Farms Located around Three Cities in Pakistan by Samia Habib, Marjorie J. Gibbon, Natacha Couto, Khadija Kakar, Safia Habib, Abdul Samad, Asim Munir, Fariha Fatima, Mashkoor Mohsin, Edward J. Feil

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Whole genome sequencing characterization of Slovenian carbapenem-resistant Klebsiella pneumoniae, including OXA-48 and NDM-1 producing outbreak isolates. by Katarina Benulič, Mateja Pirš, Natacha Couto, Monika Chlebowicz, John W A Rossen, Tomaž Mark Zorec, Katja Seme, Mario Poljak, Tatjana Lejko Zupanc, Eva Ružić-Sabljić, Tjaša Cerar

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Commonality of Multidrug-Resistant Klebsiella pneumoniae ST348 Isolates in Horses and Humans in Portugal by Filipa Trigo da Roza, Natacha Couto, Carla Carneiro, Eva Cunha, Teresa Rosa, Mariana Magalhães, Luís Tavares, Ângela Novais, Luísa Peixe, John W. Rossen, Luís P. Lamas, Manuela Oliveira

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Long-read sequencing-based in silico phage typing of vancomycin-resistant Enterococcus faecium by Paola Lisotto, Erwin C. Raangs, Natacha Couto, Sigrid Rosema, Mariëtte Lokate, Xuewei Zhou, Alexander W. Friedrich, John W. A. Rossen, Hermie J. M. Harmsen, Erik Bathoorn, Monika A. Chlebowicz-Fliss

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Virulence and resistance properties of E. coli isolated from urine samples of hospitalized patients in Rio de Janeiro, Brazil – The role of mobile genetic elements by Ana Carolina da Cruz Campos, Natacha Couto, Nathália Lucas da Silva Andrade, Alex W. Friedrich, Ana Cláudia de Paula Rosa, Paulo Vieira Damasco, Monika A. Chlebowicz-Fliss, John W.A. Rossen

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A Comparison of Three Different Bioinformatics Analyses of the 16S–23S rRNA Encoding Region for Bacterial Identification by Nilay Peker, Sharron Garcia-Croes, Brigitte Dijkhuizen, Henry H. Wiersma, Evert van Zanten, Guido Wisselink, Alex W. Friedrich, Mirjam Kooistra-Smid, Mirjam Kooistra-Smid, Bhanu Sinha, John W. A. Rossen, Natacha Couto

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Assessment of Viral Targeted Sequence Capture Using Nanopore Sequencing Directly from Clinical Samples by Leonard Schuele, Hayley Cassidy, Erley Lizarazo, Katrin Strutzberg-Minder, Sabine Schuetze, Sandra Loebert, Claudia Lambrecht, Juergen Harlizius, Alex W. Friedrich, Silke Peter, Hubert G. M. Niesters, John W. A. Rossen, Natacha Couto

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Determining the Virulence Properties of <i>Escherichia coli</i> ST131 Containing Bacteriocin-Encoding Plasmids Using Short- and Long-Read Sequencing and Comparing Them with Those o... by Ana Carolina da Cruz Campos, Francis M. Cavallo, Nathália L. Andrade, Jan Maarten van Dijl, Natacha Couto, Jan Zrimec, Jerome R. Lo Ten Foe, Ana C. P. Rosa, Paulo V. Damasco, Alex W. Friedrich, Monika A. Chlebowicz-Flissikowska, John W. A. Rossen

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Staphylococcus aureus populations from the gut and the blood are not distinguished by virulence traits—a critical role of host barrier integrity by Elisa J. M. Raineri, Sandra Maaß, Min Wang, Siobhan Brushett, Laura M. Palma Medina, Neus Sampol Escandell, Dania Altulea, Erwin Raangs, Anne de Jong, Elias Vera Murguia, Edward J. Feil, Alex W. Friedrich, Girbe Buist, Dörte Becher, Silvia García-Cobos, Natacha Couto, Jan Maarten van Dijl

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