The evolution of genome-scale models of cancer metabolism by Nathan E Lewis, Alyaa M Abdel-Haleem

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GlycoMME, a Markov modeling platform for studying N-glycosylation biosynthesis from glycomics data by Chenguang Liang, Austin W.T. Chiang, Nathan E. Lewis

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Microbial laboratory evolution in the era of genome‐scale science by Tom M Conrad, Nathan E Lewis, Bernhard Ø Palsson

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An improved algorithm for flux variability analysis by Dustin Kenefake, Erick Armingol, Nathan E. Lewis, Efstratios N. Pistikopoulos

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Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions. by Anne Richelle, Austin W T Chiang, Chih-Chung Kuo, Nathan E Lewis

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Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions by Aarash Bordbar, Nathan E Lewis, Jan Schellenberger, Bernhard Ø Palsson, Neema Jamshidi

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What are housekeeping genes? by Chintan J Joshi, Wenfan Ke, Anna Drangowska-Way, Eyleen J O'Rourke, Nathan E Lewis

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Context-aware deconvolution of cell–cell communication with Tensor-cell2cell by Erick Armingol, Hratch M. Baghdassarian, Cameron Martino, Araceli Perez-Lopez, Caitlin Aamodt, Rob Knight, Nathan E. Lewis

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Correction: StanDep: Capturing transcriptomic variability improves context-specific metabolic models. by Chintan J Joshi, Song-Min Schinn, Anne Richelle, Isaac Shamie, Eyleen J O'Rourke, Nathan E Lewis

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Correction: StanDep: Capturing transcriptomic variability improves context-specific metabolic models by Chintan J. Joshi, Song-Min Schinn, Anne Richelle, Isaac Shamie, Eyleen J. O’Rourke, Nathan E. Lewis

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Minimal metabolic pathway structure is consistent with associated biomolecular interactions by Aarash Bordbar, Harish Nagarajan, Nathan E Lewis, Haythem Latif, Ali Ebrahim, Stephen Federowicz, Jan Schellenberger, Bernhard O Palsson

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Mitigating biomass composition uncertainties in flux balance analysis using ensemble representations by Yoon-Mi Choi, Dong-Hyuk Choi, Yi Qing Lee, Lokanand Koduru, Nathan E. Lewis, Meiyappan Lakshmanan, Dong-Yup Lee

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Preparing glycomics data for robust statistical analysis with GlyCompareCT by Yujie Zhang, Sridevi Krishnan, Bokan Bao, Austin W.T. Chiang, James T. Sorrentino, Song-Min Schinn, Benjamin P. Kellman, Nathan E. Lewis

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Evolution of the exclusively human pathogen Neisseria gonorrhoeae: Human‐specific engagement of immunoregulatory Siglecs by Corinna S. Landig, Ashley Hazel, Benjamin P. Kellman, Jerry J. Fong, Flavio Schwarz, Sarika Agarwal, Nissi Varki, Paola Massari, Nathan E. Lewis, Sanjay Ram, Ajit Varki

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Pathogen-driven degradation of endogenous and therapeutic antibodies during streptococcal infections by Alejandro Gomez Toledo, Eleni Bratanis, Erika Velásquez, Sounak Chowdhury, Berit Olofsson, James T. Sorrentino, Christofer Karlsson, Nathan E. Lewis, Jeffrey D. Esko, Mattias Collin, Oonagh Shannon, Johan Malmström

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Dissecting the properties of circulating IgG against streptococcal pathogens through a combined systems antigenomics-serology workflow by Alejandro Gomez Toledo, Sounak Chowdhury, Elisabeth Hjortswang, James T. Sorrentino, Nathan E. Lewis, Anna Bläckberg, Simon Ekström, Sven Kjellström, Arman Izadi, Berit Olofsson, Pontus Nordenfelt, Lars Malmström, Magnus Rasmussen, Johan Malmström

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Vascular Proteome Responses Precede Organ Dysfunction in a Murine Model of Staphylococcus aureus Bacteremia by James T. Sorrentino, Gregory J. Golden, Claire Morris, Chelsea D. Painter, Victor Nizet, Alexandre Rosa Campos, Jeffrey W. Smith, Christofer Karlsson, Johan Malmström, Nathan E. Lewis, Jeffrey D. Esko, Alejandro Gómez Toledo

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Rapid neurogenesis through transcriptional activation in human stem cells by Volker Busskamp, Nathan E Lewis, Patrick Guye, Alex HM Ng, Seth L Shipman, Susan M Byrne, Neville E Sanjana, Jernej Murn, Yinqing Li, Shangzhong Li, Michael Stadler, Ron Weiss, George M Church

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ImmCellFie: A user-friendly web-based platform to infer metabolic function from omics data by Helen O. Masson, David Borland, Jason Reilly, Adrian Telleria, Shalki Shrivastava, Matt Watson, Luthfi Bustillos, Zerong Li, Laura Capps, Benjamin P. Kellman, Zachary A. King, Anne Richelle, Nathan E. Lewis, Kimberly Robasky

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Inferring a spatial code of cell-cell interactions across a whole animal body. by Erick Armingol, Abbas Ghaddar, Chintan J Joshi, Hratch Baghdassarian, Isaac Shamie, Jason Chan, Hsuan-Lin Her, Samuel Berhanu, Anushka Dar, Fabiola Rodriguez-Armstrong, Olivia Yang, Eyleen J O'Rourke, Nathan E Lewis

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