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Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design by Ferguson, Andrew L., Mann, Jaclyn K., Omarjee, Saleha, Ndung'u, Thumbi, Walker, Bruce D., Chakraborty, Arup K., Ferguson, Andrew L.
Published 2016
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2
The Fitness Landscape of HIV-1 Gag: Advanced Modeling Approaches and Validation of Model Predictions by In Vitro Testing by Mann, Jaclyn K., Barton, John P., Ferguson, Andrew L., Omarjee, Saleha, Walker, Bruce D., Ndung'u, Thumbi, Chakraborty, Arup K
Published 2014
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Subtype-specific differences in Gag-protease replication capacity of HIV-1 isolates from East and West Africa by Farinre, Omotayo, Gounder, Kamini, Reddy, Tarylee, Tongo, Marcel, Hare, Jonathan, Chaplin, Beth, Gilmour, Jill, Kanki, Phyllis, Mann, Jaclyn K, Ndung’u, Thumbi
Published 2021
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HIV-1 subtype C Nef-mediated SERINC5 down-regulation significantly contributes to overall Nef activity by Naicker, Delon, Sonela, Nelson, Jin, Steven W., Mulaudzi, Takalani, Ojwach, Doty, Reddy, Tarylee, Brockman, Mark A., Brumme, Zabrina L., Ndung’u, Thumbi, Mann, Jaclyn K.
Published 2023
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Regulatory T Cells Expanded from Hiv-1-Infected Individuals Maintain Phenotype, Tcr Repertoire and Suppressive Capacity by Angin, Mathieu, Klarenbeek, Paul L., King, Melanie, Sharma, Siddhartha M., Moodley, Eshia S., Rezai, Ashley, Piechocka-Trocha, Alicja, Toth, Ildiko, Chan, Andrew T., Goulder, Philip J. R., Ndung'u, Thumbi, Kwon, Douglas, Addo, Marylyn M.
Published 2014
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Augmentation of HIV-specific T cell function by immediate treatment of hyperacute HIV-1 infection by Ndhlovu, Zaza M., Kazer, Samuel Weisgurt, Nkosi, Thandeka, Ogunshola, Funsho, Muema, Daniel M., Anmole, Gursev, Swann, Shayda A., Moodley, Amber, Dong, Krista, Reddy, Tarylee, Brockman, Mark A., Shalek, Alexander K, Ndung’u, Thumbi, Walker, Bruce
Published 2020
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Characterization of anti-HIV-1 neutralizing and binding antibodies in chronic HIV-1 subtype C infection by Archary, Derseree, Rong, Rong, Gordon, Michelle L., Boliar, Saikat, Madiga, Maphuti, Gray, Elin S., Dugast, Anne-Sophie, Hermanus, Tandile, Goulder, Philip J. R., Coovadia, Hoosen M., Werner, Lise, Morris, Lynn, Alter, Galit, Derdeyn, Cynthia A., Ndung'u, Thumbi
Published 2014
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9
High-Frequency, Functional HIV-Specific T-Follicular Helper and Regulatory Cells Are Present Within Germinal Centers in Children but Not Adults by Roider, Julia, Maehara, Takashi, Ngoepe, Abigail, Ramsuran, Duran, Muenchhoff, Maximilian, Adland, Emily, Jooste, Pieter, Karim, Farina, Kuhn, Warren, Ndung'u, Thumbi, Morris, Lynn, Moore, Penny L., Kløverpris, Henrik, Goulder, Philip, Leslie, Alasdair, Aicher, Toby Paul, Kazer, Samuel Weisgurt, Shalek, Alexander K, Pillai, Shiv
Published 2018
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Innate Lymphoid Cell Activation and Sustained Depletion in Blood and Tissue of Children Infected with HIV from Birth Despite Antiretroviral Therapy by Singh, Alveera, Kazer, Samuel W, Roider, Julia, Krista, Kami C, Millar, Jane, Asowata, Osaretin E, Ngoepe, Abigail, Ramsuran, Duran, Fardoos, Rabiah, Ardain, Amanda, Muenchhoff, Maximilian, Kuhn, Warren, Karim, Farina, Ndung’u, Thumbi, Shalek, Alex K, Goulder, Philip, Leslie, Alasdair, Kløverpris, Henrik N
Published 2022
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MR1-Restricted MAIT Cells From The Human Lung Mucosal Surface Have Distinct Phenotypic, Functional, and Transcriptomic Features That Are Preserved in HIV Infection by Khuzwayo, Sharon, Mthembu, Maphe, Meermeier, Erin W, Prakadan, Sanjay M, Kazer, Samuel W, Bassett, Thierry, Nyamande, Kennedy, Khan, Dilshaad Fakey, Maharaj, Priya, Mitha, Mohammed, Suleman, Moosa, Mhlane, Zoey, Ramjit, Dirhona, Karim, Farina, Shalek, Alex K, Lewinsohn, David M, Ndung’u, Thumbi, Wong, Emily B
Published 2022
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Amino-Acid Co-Variation in HIV-1 Gag Subtype C: HLA-Mediated Selection Pressure and Compensatory Dynamics by Brander, Christian, Walker, Bruce D., Goulder, Philip J. R., Rolland, Morgane, Carlson, Jonathan M., Manocheewa, Siriphan, Rousseau, Christine M., Raugi, Dana N., Learn, Gerald H., Maust, Brandon S., Coovadia, Hoosen M., Ndung'u, Thumbi, Heckerman, David, Mullins, James I., Swain, J. Victor, Lanxon-Cookson, Erinn, Deng, Wenjie
Published 2011
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Magnitude and Kinetics of CD8[superscript +] T Cell Activation during Hyperacute HIV Infection Impact Viral Set Point by Ndhlovu, Zaza M., Kamya, Philomena, Mewalal, Nikoshia, Kløverpris, Henrik N., Nkosi, Thandeka, Pretorius, Karyn, Laher, Faatima, Ogunshola, Funsho, Chopera, Denis, Ghebremichael, Musie, Ismail, Nasreen, Moodley, Amber, Malik, Amna, Leslie, Alasdair, Goulder, Philip J.R., Buus, Søren, Dong, Krista, Ndung’u, Thumbi, Walker, Bruce D., Chakraborty, Arup K, Shekhar, Karthik
Published 2017
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14
Selection of an HLA-C*03:04-Restricted HIV-1 p24 Gag Sequence Variant Is Associated with Viral Escape from KIR2DL3+ Natural Killer Cells: Data from an Observational Cohort in South... by Thobakgale, Christina F., Jimenez Cruz, Camilo A., Garcia-Beltran, Wilfredo F., Carlson, Jonathan M., van Teijlingen, Nienke H., Mann, Jaclyn K., Jaggernath, Manjeetha, Kang, Seung-gu, Chung, Amy W., Schafer, Jamie L., Evans, David T., Alter, Galit, Walker, Bruce D., Goulder, Philip J., Carrington, Mary, Hartmann, Pia, Pertel, Thomas, Zhou, Ruhong, Ndung'u, Thumbi, Altfeld, Marcus, Holzemer, Angelique, Korner, Christian
Published 2016
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Innate Lymphoid Cells Are Depleted Irreversibly during Acute HIV-1 Infection in the Absence of Viral Suppression by Kløverpris, Henrik N., Mjösberg, Jenny, Mabuka, Jenniffer M., Wellmann, Amanda, Ndhlovu, Zaza, Yadon, Marisa C., Nhamoyebonde, Shepherd, Muenchhoff, Maximilian, Simoni, Yannick, Andersson, Frank, Kuhn, Warren, Garrett, Nigel, Burgers, Wendy A., Kamya, Philomena, Pretorius, Karyn, Dong, Krista, Moodley, Amber, Newell, Evan W., Kasprowicz, Victoria, Abdool Karim, Salim S., Goulder, Philip, Walker, Bruce D., Ndung’u, Thumbi, Leslie, Alasdair, Kazer, Samuel Weisgurt, Shalek, Alexander K
Published 2018
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16
Group 3 innate lymphoid cells mediate early protective immunity against tuberculosis by Ardain, Amanda, Domingo-Gonzalez, Racquel, Das, Shibali, Kazer, Samuel Weisgurt, Howard, Nicole C., Singh, Alveera, Ahmed, Mushtaq, Nhamoyebonde, Shepherd, Rangel-Moreno, Javier, Ogongo, Paul, Lu, Lan, Ramsuran, Duran, de la Luz Garcia-Hernandez, Maria, K. Ulland, Tyler, Darby, Matthew, Park, Eugene, Karim, Farina, Melocchi, Laura, Madansein, Rajhmun, Dullabh, Kaylesh Jay, Dunlap, Micah, Marin-Agudelo, Nancy, Ebihara, Takashi, Ndung’u, Thumbi, Kaushal, Deepak, Pym, Alexander S., Kolls, Jay K., Steyn, Adrie, Zuniga, Joaquin, Horsnell, William, Yokoyama, Wayne M., Shalek, Alexander K, Kloverpris, Henrik N., Colonna, Marco, Leslie, Alasdair, Khader, Shabaana A.
Published 2020
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