The Plasmodium falciparum Rh5 invasion protein complex reveals an excess of rare variant mutations od Ndwiga, L, Osoti, V, Ochwedo, KO, Wamae, K, Bejon, P, Rayner, JC, Githinji, G, Ochola-Oyier, LI

No evidence of P. falciparum K13 artemisinin conferring mutations over a 24-year analysis in Coastal Kenya, but a near complete reversion to chloroquine wild type parasites od Wamae, K, Okanda, D, Ndwiga, L, Osoti, V, Kimenyi, K, Abdi, A, Bejon, P, Sutherland, C, Ochola-Oyier, L

Maintenance of high temporal Plasmodium falciparum genetic diversity and complexity of infection in asymptomatic and symptomatic infections in Kilifi, Kenya from 2007 to 2018 od Kimenyi, KM, Wamae, K, Ngoi, JM, de Laurent, ZR, Ndwiga, L, Osoti, V, Obiero, G, Abdi, AI, Bejon, P, Ochola-Oyier, LI

Amplicon sequencing as a potential surveillance tool for complexity of infection and drug resistance markers in Plasmodium falciparum asymptomatic infections od Wamae, K, Kimenyi, KM, Osoti, V, de Laurent, ZR, Ndwiga, L, Kharabora, O, Hathaway, NJ, Bailey, JA, Juliano, JJ, Bejon, P, Ochola-Oyier, LI

Detection of low frequency artemisinin resistance mutations, C469Y, P553L and A675V, and fixed antifolate resistance mutations in asymptomatic primary school children in Kenya od Osoti, V, Wamae, K, Ndwiga, L, Gichuki, PM, Okoyo, C, Kepha, S, Keitany, K, Kandie, R, Aricha, S, Kiplagat, R, Mwandawiro, C, Bejon, P, Snow, RW, Ochola-Oyier, LI

Optimization of the SARS-CoV-2 ARTIC network V4 primers and whole genome sequencing protocol od Lambisia, AW, Mohammed, KS, Makori, TO, Ndwiga, L, Mburu, MW, Morobe, JM, Moraa, EO, Musyoki, J, Murunga, N, Mwangi, JN, Nokes, DJ, Agoti, CN, Ochola-Oyier, LI, Githinji, G

Targeted amplicon deep sequencing for monitoring antimalarial resistance markers in western Kenya od Osoti, V, Akinyi, M, Wamae, K, Kimenyi, KM, de Laurent, Z, Ndwiga, L, Gichuki, P, Okoyo, C, Kepha, S, Mwandawiro, C, Kandie, R, Bejon, P, Snow, RW, Ochola-Oyier, LI

The design and evaluation of a mobile system for rapid diagnostic test interpretation od Park, C, Ngo, H, Lavitt, LR, Karuri, V, Bhatt, S, Lubell-Doughtie, P, Shankar, AH, Ndwiga, L, Osoti, V, Wambua, JK, Bejon, P, Ochola-Oyier, LI, Chilver, M, Stocks, N, Lyon, V, Lutz, BR, Thompson, M, Mariakakis, A, Patel, S

A review of the frequencies of Plasmodium falciparum Kelch 13 artemisinin resistance mutations in Africa od Ndwiga, L, Kimenyi, KM, Wamae, K, Osoti, V, Akinyi, M, Omedo, I, Ishengoma, DS, Duah-Quashie, N, Andagalu, B, Ghansah, A, Amambua-Ngwa, A, Tukwasibwe, S, Tessema, SK, Karema, C, Djimde, AA, Dondorp, AM, Raman, J, Snow, RW, Bejon, P, Ochola-Oyier, LI

Epidemiology of COVID-19 infections on routine polymerase chain reaction (PCR) and serology testing in Coastal Kenya od Nyagwange, J, Ndwiga, L, Muteru, K, Wamae, K, Tuju, J, Testing Team, C, Kutima, B, Gitonga, J, Karanja, H, Mugo, D, Kasera, K, Amoth, P, Murunga, N, Babu, L, Otieno, E, Githinji, G, Nokes, DJ, Tsofa, B, Orindi, B, Barasa, E, Warimwe, G, Agoti, CN, Bejon, P, Ochola-Oyier, LI

Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: a retrospective genomic study od Agoti, CN, Ochola-Oyier, LI, Dellicour, S, Mohammed, KS, Lambisia, AW, de Laurent, ZR, Morobe, JM, Mburu, MW, Omuoyo, DO, Ongera, EM, Ndwiga, L, Maitha, E, Kitole, B, Suleiman, T, Mwakinangu, M, Nyambu, JK, Otieno, J, Salim, B, Musyoki, J, Murunga, N, Otieno, E, Kiiru, JN, Kasera, K, Amoth, P, Mwangangi, M, Aman, R, Kinyanjui, S, Warimwe, G, Phan, M, Agweyu, A, Cotten, M, Barasa, E, Tsofa, B, Nokes, DJ, Bejon, P, Githinji, G

Genomic epidemiology of SARS-CoV-2 in Seychelles, 2020–2021 od Morobe, JM, Pool, B, Marie, L, Didon, D, Lambisia, AW, Makori, T, Mohammed, KS, de Laurent, ZR, Ndwiga, L, Mburu, MW, Moraa, E, Murunga, N, Musyoki, J, Mwacharo, J, Nyamako, L, Riako, D, Ephnatus, P, Gambo, F, Naimani, J, Namulondo, J, Tembo, SZ, Ogendi, E, Balde, T, Dratibi, FA, Yahaya, AA, Gumede, N, Achilla, RA, Borus, PK, Wanjohi, DW, Tessema, SK, Mwangangi, J, Bejon, P, Nokes, DJ, Ochola-Oyier, LI, Githinji, G, Biscornet, L, Agoti, CN

Seroprevalence of anti-SARS-CoV-2 IgG antibodies in Kenyan blood donors od Uyoga, S, Adetifa, IMO, Karanja, H, Nyagwange, J, Tuju, J, Wanjiku, P, Aman, R, Mwangangi, M, Amoth, P, Kasera, K, Ng’ang’a, W, Rombo, C, Yegon, C, Kithi, K, Odhiambo, E, Rotich, T, Orgut, I, Kihara, S, Otiende, M, Bottomley, C, Mupe, ZN, Kagucia, EW, Gallagher, KE, Etyang, A, Voller, S, Gitonga, JN, Mugo, D, Agoti, CN, Otieno, E, Ndwiga, L, Lambe, T, Wright, D, Barasa, E, Tsofa, B, Bejon, P, Ochola-Oyier, LI, Agweyu, A, Scott, A, Warimwe, G

Sero-surveillance for IgG to SARS-CoV-2 at antenatal care clinics in three Kenyan referral hospitals: Repeated cross-sectional surveys 2020-21 od Lucinde, RK, Mugo, D, Bottomley, C, Karani, A, Gardiner, E, Aziza, R, Gitonga, JN, Karanja, H, Nyagwange, J, Tuju, J, Wanjiku, P, Nzomo, E, Kamuri, E, Thuranira, K, Agunda, S, Nyutu, G, Etyang, AO, Adetifa, IMO, Kagucia, E, Uyoga, S, Otiende, M, Otieno, E, Ndwiga, L, Agoti, CN, Aman, RA, Mwangangi, M, Amoth, P, Kasera, K, Nyaguara, A, Ng'ang'a, W, Ochola, LB, Namdala, E, Gaunya, O, Okuku, R, Barasa, E, Bejon, P, Tsofa, B, Ochola-Oyier, LI, Warimwe, GM, Agweyu, A, Scott, JAG, Gallagher, KE

Seroprevalence of antibodies to SARS-CoV-2 among health care workers in Kenya od Etyang, AO, Lucinde, R, Karanja, H, Kalu, C, Mugo, D, Nyagwange, J, Gitonga, J, Tuju, J, Wanjiku, P, Karani, A, Mutua, S, Maroko, H, Nzomo, E, Maitha, E, Kamuri, E, Kaugiria, T, Weru, J, Ochola, LB, Kilimo, N, Charo, S, Emukule, N, Moracha, W, Mukabi, D, Okuku, R, Ogutu, M, Angujo, B, Otiende, M, Bottomley, C, Otieno, E, Ndwiga, L, Nyaguara, A, Voller, S, Agoti, C, Nokes, DJ, Ochola-Oyier, LI, Aman, R, Amoth, P, Mwangangi, M, Kasera, K, Ng'ang'a, W, Adetifa, I, Kagucia, EW, Gallagher, K, Uyoga, S, Tsofa, B, Barasa, E, Bejon, P, Scott, JAG, Agweyu, A, Warimwe, G