Next Generation Sequencing for Detection and Discovery of Plant Viruses and Viroids: Comparison of Two Approaches by Anja Pecman, Anja Pecman, Denis Kutnjak, Ion Gutiérrez-Aguirre, Ian Adams, Adrian Fox, Neil Boonham, Neil Boonham, Maja Ravnikar

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Mottle: Accurate pairwise substitution distance at high divergence through the exploitation of short-read mappers and gradient descent. by Alisa Prusokiene, Neil Boonham, Adrian Fox, Thomas P Howard

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Morphological and molecular evidence supporting the validity of Trialeurodes lauri and T. ricini (Hemiptera: Sternorrhyncha: Aleyrodidae) by Christopher MALUMPHY, M. Belen SUAREZ, Rachel GLOVER, Neil BOONHAM, Dominique W. COLLINS

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Target-Site and Non-target-Site Resistance Mechanisms Confer Multiple and Cross- Resistance to ALS and ACCase Inhibiting Herbicides in Lolium rigidum From Spain by Joel Torra, José María Montull, Andreu Taberner, Nawaporn Onkokesung, Neil Boonham, Robert Edwards

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The Effects of Plant Virus Infection on Polarization Reflection from Leaves. by Daniel J Maxwell, Julian C Partridge, Nicholas W Roberts, Neil Boonham, Gary D Foster

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Monitoring and Surveillance of Aerial Mycobiota of Rice Paddy through DNA Metabarcoding and qPCR by Sara Franco Ortega, Ilario Ferrocino, Ian Adams, Simone Silvestri, Davide Spadaro, Maria Lodovica Gullino, Neil Boonham

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Systematic Comparison of Nanopore and Illumina Sequencing for the Detection of Plant Viruses and Viroids Using Total RNA Sequencing Approach by Anja Pecman, Anja Pecman, Ian Adams, Ion Gutiérrez-Aguirre, Adrian Fox, Neil Boonham, Maja Ravnikar, Denis Kutnjak

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Microsporidia infection impacts the host cell's cycle and reduces host cell apoptosis. by Raquel Martín-Hernández, Mariano Higes, Soledad Sagastume, Ángeles Juarranz, Joyce Dias-Almeida, Giles E Budge, Aránzazu Meana, Neil Boonham

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Carrot yellow leaf virus is associated with carrot internal necrosis. by Ian P Adams, Anna Skelton, Roy Macarthur, Tobias Hodges, Howard Hinds, Laura Flint, Palash Deb Nath, Neil Boonham, Adrian Fox

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Enhanced Apiaceous Potyvirus Phylogeny, Novel Viruses, and New Country and Host Records from Sequencing <i>Apiaceae</i> Samples by Adrian Fox, Adrian J. Gibbs, Aimee R. Fowkes, Hollie Pufal, Sam McGreig, Roger A. C. Jones, Neil Boonham, Ian P. Adams

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Generating and testing ecological hypotheses at the pondscape with environmental DNA metabarcoding: A case study on a threatened amphibian by Lynsey R. Harper, Lori Lawson Handley, Christoph Hahn, Neil Boonham, Helen C. Rees, Erin Lewis, Ian P. Adams, Peter Brotherton, Susanna Phillips, Bernd Hänfling

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High-Throughput Sequencing Facilitates Characterization of a “Forgotten” Plant Virus: The Case of a Henbane Mosaic Virus Infecting Tomato by Anja Pecman, Anja Pecman, Denis Kutnjak, Nataša Mehle, Magda Tušek Žnidarič, Ion Gutiérrez-Aguirre, Patricija Pirnat, Ian Adams, Neil Boonham, Maja Ravnikar, Maja Ravnikar

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The Phylogeography of Potato Virus X Shows the Fingerprints of Its Human Vector by Segundo Fuentes, Adrian J. Gibbs, Mohammad Hajizadeh, Ana Perez, Ian P. Adams, Cesar E. Fribourg, Jan Kreuze, Adrian Fox, Neil Boonham, Roger A. C. Jones

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Profiling azole resistant haplotypes within Zymoseptoria tritici populations using nanopore sequencing by Yaiza Gutierrez Vazquez, Yaiza Gutierrez Vazquez, Ian P. Adams, Ian P. Adams, Sam McGreig, John Walshaw, Femke van den Berg, Roy Sanderson, Hollie Pufal, Chris Conyers, David Langton, Ruth Broadhead, Catherine Harrison, Neil Boonham

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A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses by Denis Kutnjak, Lucie Tamisier, Ian Adams, Neil Boonham, Thierry Candresse, Michela Chiumenti, Kris De Jonghe, Jan F. Kreuze, Marie Lefebvre, Gonçalo Silva, Martha Malapi-Wight, Paolo Margaria, Irena Mavrič Pleško, Sam McGreig, Laura Miozzi, Benoit Remenant, Jean-Sebastien Reynard, Johan Rollin, Mike Rott, Olivier Schumpp, Sébastien Massart, Annelies Haegeman

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Managing the deluge of newly discovered plant viruses and viroids: an optimized scientific and regulatory framework for their characterization and risk analysis by Nuria Fontdevila Pareta, Maryam Khalili, Maryam Khalili, Ayoub Maachi, Mark Paul S. Rivarez, Mark Paul S. Rivarez, Johan Rollin, Johan Rollin, Ferran Salavert, Coline Temple, Miguel A. Aranda, Neil Boonham, Marleen Botermans, Thierry Candresse, Adrian Fox, Adrian Fox, Yolanda Hernando, Denis Kutnjak, Armelle Marais, Françoise Petter, Maja Ravnikar, Ilhem Selmi, Rachid Tahzima, Rachid Tahzima, Charlotte Trontin, Thierry Wetzel, Sebastien Massart, Sebastien Massart

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Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests by Annelies Haegeman, Yoika Foucart, Kris De Jonghe, Thomas Goedefroit, Maher Al Rwahnih, Neil Boonham, Thierry Candresse, Yahya Z. A. Gaafar, Oscar P. Hurtado-Gonzales, Zala Kogej Zwitter, Denis Kutnjak, Janja Lamovšek, Marie Lefebvre, Martha Malapi, Irena Mavrič Pleško, Serkan Önder, Jean-Sébastien Reynard, Ferran Salavert Pamblanco, Olivier Schumpp, Kristian Stevens, Chandan Pal, Lucie Tamisier, Çiğdem Ulubaş Serçe, Inge van Duivenbode, David W. Waite, Xiaojun Hu, Heiko Ziebell, Sébastien Massart

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Correction: Haegeman et al. Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests. <i>Pl... by Annelies Haegeman, Yoika Foucart, Kris De Jonghe, Thomas Goedefroit, Maher Al Rwahnih, Neil Boonham, Thierry Candresse, Yahya Z. A. Gaafar, Oscar P. Hurtado-Gonzales, Zala Kogej Zwitter, Denis Kutnjak, Janja Lamovšek, Marie Lefebvre, Martha Malapi, Irena Mavrič Pleško, Serkan Önder, Jean-Sébastien Reynard, Ferran Salavert Pamblanco, Olivier Schumpp, Kristian Stevens, Chandan Pal, Lucie Tamisier, Çiğdem Ulubaş Serçe, Inge van Duivenbode, David W. Waite, Xiaojun Hu, Heiko Ziebell, Sébastien Massart

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