Leveraging pleiotropy for joint analysis of genome-wide association studies with per trait interpretations. by Kodi Taraszka, Noah Zaitlen, Eleazar Eskin

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Constructing germline research cohorts from the discarded reads of clinical tumor sequences by Alexander Gusev, Stefan Groha, Kodi Taraszka, Yevgeniy R. Semenov, Noah Zaitlen

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Reverse GWAS: Using genetics to identify and model phenotypic subtypes. by Andy Dahl, Na Cai, Arthur Ko, Markku Laakso, Päivi Pajukanta, Jonathan Flint, Noah Zaitlen

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Tracing cellular heterogeneity in pooled genetic screens via multi-level barcoding by Michael Boettcher, Sergio Covarrubias, Anne Biton, James Blau, Haopeng Wang, Noah Zaitlen, Michael T. McManus

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GBAT: a gene-based association test for robust detection of trans-gene regulation by Xuanyao Liu, Joel A. Mefford, Andrew Dahl, Yuan He, Meena Subramaniam, Alexis Battle, Alkes L. Price, Noah Zaitlen

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Comprehensive cell type decomposition of circulating cell-free DNA with CelFiE by Christa Caggiano, Barbara Celona, Fleur Garton, Joel Mefford, Brian L. Black, Robert Henderson, Catherine Lomen-Hoerth, Andrew Dahl, Noah Zaitlen

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Multi-context genetic modeling of transcriptional regulation resolves novel disease loci by Mike Thompson, Mary Grace Gordon, Andrew Lu, Anchit Tandon, Eran Halperin, Alexander Gusev, Chun Jimmie Ye, Brunilda Balliu, Noah Zaitlen

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Modeling epistasis in mice and yeast using the proportion of two or more distinct genetic backgrounds: Evidence for "polygenic epistasis". by Christoph D Rau, Natalia M Gonzales, Joshua S Bloom, Danny Park, Julien Ayroles, Abraham A Palmer, Aldons J Lusis, Noah Zaitlen

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A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context by Apolline Gallois, Joel Mefford, Arthur Ko, Amaury Vaysse, Hanna Julienne, Mika Ala-Korpela, Markku Laakso, Noah Zaitlen, Päivi Pajukanta, Hugues Aschard

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Methylation risk scores are associated with a collection of phenotypes within electronic health record systems by Mike Thompson, Brian L. Hill, Nadav Rakocz, Jeffrey N. Chiang, Daniel Geschwind, Sriram Sankararaman, Ira Hofer, Maxime Cannesson, Noah Zaitlen, Eran Halperin

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Genetic and environmental perturbations lead to regulatory decoherence by Amanda Lea, Meena Subramaniam, Arthur Ko, Terho Lehtimäki, Emma Raitoharju, Mika Kähönen, Ilkka Seppälä, Nina Mononen, Olli T Raitakari, Mika Ala-Korpela, Päivi Pajukanta, Noah Zaitlen, Julien F Ayroles

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GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteins by Wandi S. Zhu, Adam J. Litterman, Harshaan S. Sekhon, Robin Kageyama, Maya M. Arce, Kimberly E. Taylor, Wenxue Zhao, Lindsey A. Criswell, Noah Zaitlen, David J. Erle, K. Mark Ansel

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Genetic effects on the commensal microbiota in inflammatory bowel disease patients. by Hugues Aschard, Vincent Laville, Eric Tchetgen Tchetgen, Dan Knights, Floris Imhann, Philippe Seksik, Noah Zaitlen, Mark S Silverberg, Jacques Cosnes, Rinse K Weersma, Ramnik Xavier, Laurent Beaugerie, David Skurnik, Harry Sokol

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Quantifying missing heritability at known GWAS loci. by Alexander Gusev, Gaurav Bhatia, Noah Zaitlen, Bjarni J Vilhjalmsson, Dorothée Diogo, Eli A Stahl, Peter K Gregersen, Jane Worthington, Lars Klareskog, Soumya Raychaudhuri, Robert M Plenge, Bogdan Pasaniuc, Alkes L Price

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Cis-eQTL-based trans-ethnic meta-analysis reveals novel genes associated with breast cancer risk. by Joshua D Hoffman, Rebecca E Graff, Nima C Emami, Caroline G Tai, Michael N Passarelli, Donglei Hu, Scott Huntsman, Dexter Hadley, Lancelote Leong, Arunabha Majumdar, Noah Zaitlen, Elad Ziv, John S Witte

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Pleiotropic Mechanisms Indicated for Sex Differences in Autism. by Ileena Mitra, Kathryn Tsang, Christine Ladd-Acosta, Lisa A Croen, Kimberly A Aldinger, Robert L Hendren, Michela Traglia, Alinoë Lavillaureix, Noah Zaitlen, Michael C Oldham, Pat Levitt, Stanley Nelson, David G Amaral, Irva Hertz-Picciotto, M Daniele Fallin, Lauren A Weiss

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Correction: Pleiotropic Mechanisms Indicated for Sex Differences in Autism. by Ileena Mitra, Kathryn Tsang, Christine Ladd-Acosta, Lisa A Croen, Kimberly A Aldinger, Robert L Hendren, Michela Traglia, Alinoë Lavillaureix, Noah Zaitlen, Michael C Oldham, Pat Levitt, Stanley Nelson, David G Amaral, Irva Hertz-Picciotto, M Daniele Fallin, Lauren A Weiss

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Author Correction: Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing by Igor Mandric, Jeremy Rotman, Harry Taegyun Yang, Nicolas Strauli, Dennis J. Montoya, William Van Der Wey, Jiem R. Ronas, Benjamin Statz, Douglas Yao, Velislava Petrova, Alex Zelikovsky, Roberto Spreafico, Sagiv Shifman, Noah Zaitlen, Maura Rossetti, K. Mark Ansel, Eleazar Eskin, Serghei Mangul

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Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing by Igor Mandric, Jeremy Rotman, Harry Taegyun Yang, Nicolas Strauli, Dennis J. Montoya, William Van Der Wey, Jiem R. Ronas, Benjamin Statz, Douglas Yao, Velislava Petrova, Alex Zelikovsky, Roberto Spreafico, Sagiv Shifman, Noah Zaitlen, Maura Rossetti, K. Mark Ansel, Eleazar Eskin, Serghei Mangul

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On the cross-population generalizability of gene expression prediction models. by Kevin L Keys, Angel C Y Mak, Marquitta J White, Walter L Eckalbar, Andrew W Dahl, Joel Mefford, Anna V Mikhaylova, María G Contreras, Jennifer R Elhawary, Celeste Eng, Donglei Hu, Scott Huntsman, Sam S Oh, Sandra Salazar, Michael A Lenoir, Jimmie C Ye, Timothy A Thornton, Noah Zaitlen, Esteban G Burchard, Christopher R Gignoux

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