Statistical Binning for Barcoded Reads Improves Downstream Analyses by Shajii, Ariya, Numanagic, Ibrahim, Whelan, Christopher, Berger Leighton, Bonnie

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Seq: a high-performance language for bioinformatics by Shajii, Ariya, Numanagić, Ibrahim, Baghdadi, Riyadh, Berger, Bonnie, Amarasinghe, Saman

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Sequre: a high-performance framework for secure multiparty computation enables biomedical data sharing by Smajlović, Haris, Shajii, Ariya, Berger, Bonnie, Cho, Hyunghoon, Numanagić, Ibrahim

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A Python-based programming language for high-performance computational genomics by Shajii, Ariya, Numanagić, Ibrahim, Leighton, Alexander T, Greenyer, Haley, Amarasinghe, Saman, Berger, Bonnie

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A Python-based programming language for high-performance computational genomics by Shajii, Ariya, Numanagić, Ibrahim, Leighton, Alexander T., Greenyer, Haley, Amarasinghe, Saman, Berger, Bonnie

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Fast characterization of segmental duplications in genome assemblies by Numanagic, Ibrahim, Gokkaya, Alim S., Zhang, Lillian, Berger Leighton, Bonnie, Alkan, Can, Hach, Faraz

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Seq: a high-performance language for bioinformatics by Shajii, Ariya, Numanagic, Ibrahim, Baghdadi, Mohamed Riyadh, Berger, Bonnie A., Amarasinghe, Saman P

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Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets by Berger, Emily, Yorukoglu, Deniz, Zhang, Lillian, Nyquist, Sarah Kate, Shalek, Alexander K, Kellis, Manolis, Numanagic, Ibrahim, Berger Leighton, Bonnie

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Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes by Malikić, Salem, Ford, Michael, Qin, Xiang, Toji, Lorraine, Radovich, Milan, Skaar, Todd C., Pratt, Victoria M., Scherer, Steve, Sahinalp, S. Cenk, Numanagic, Ibrahim, Berger Leighton, Bonnie

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