Using multiple sampling strategies to estimate SARS-CoV-2 epidemiological parameters from genomic sequencing data von Rhys P. D. Inward, Kris V. Parag, Nuno R. Faria

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Altered demographic profile of hospitalizations during the second COVID-19 wave in Amazonas, Brazil von Charles Whittaker, Oliver Ratmann, Christopher Dye, Ester C. Sabino, Nuno R. Faria

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Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak von Simon Dellicour, Guy Baele, Gytis Dudas, Nuno R. Faria, Oliver G. Pybus, Marc A. Suchard, Andrew Rambaut, Philippe Lemey

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First Report of <em>Wenzhou sobemo-like virus 4</em> in <em>Aedes albopictus</em> (Diptera: Culicidae) in Latin America von Pâmela S. Andrade, Ian N. Valença, Marta R. S. Heinisch, Esmenia C. Rocha, Lícia N. Fernandes, Nuno R. Faria, Ester C. Sabino, Tamara N. Lima-Camara

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Seroprevalence of Kaposi Sarcoma–associated Herpesvirus and Other Serologic Markers in the Brazilian Amazon von Maria C. Nascimento, Laura M. Sumita, Vanda U. Souza, Helen A. Weiss, Juliane Oliveira, Melissa Mascheretti, Mariana Quiroga, Rodrigo A.R. Vela, Nuno R. Faria, Claudio S. Pannuti, Philippe Mayaud

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Dataset on SARS-CoV-2 non-pharmaceutical interventions in Brazilian municipalities von Andreza Aruska de Souza Santos, Darlan da Silva Candido, William Marciel de Souza, Lewis Buss, Sabrina L. Li, Rafael H. M. Pereira, Chieh-Hsi Wu, Ester C. Sabino, Nuno R. Faria

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Opsoclonus-myoclonus-ataxia syndrome associated with chikungunya and dengue virus co-infection von Mateus Santana do Rosário, Marta Giovanetti, Pedro Antonio Pereira de Jesus, Daniel Santana Farias, Nuno R. Faria, Clayton Pereira S. de Lima, Sandro Patroca da Silva, Marcio Roberto Nunes, Luiz Carlos Junior Alcantara, Isadora Cristina de Siqueira

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Chikungunya: a decade of burden in the Americas von William M. de Souza, Guilherme S. Ribeiro, Shirlene T.S. de Lima, Ronaldo de Jesus, Filipe R.R. Moreira, Charles Whittaker, Maria Anice M. Sallum, Christine V.F. Carrington, Ester C. Sabino, Uriel Kitron, Nuno R. Faria, Scott C. Weaver

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Tracking the emergence of disparities in the subnational spread of COVID-19 in Brazil using an online application for real-time data visualisation: A longitudinal analysis von Paul Mee, Neal Alexander, Philippe Mayaud, Felipe de Jesus Colón González, Sam Abbott, Andreza Aruska de Souza Santos, André Luís Acosta, Kris V. Parag, Rafael H.M. Pereira, Carlos A. Prete, Jr, Ester C. Sabino, Nuno R. Faria, Oliver J Brady

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Dynamics of SARS-CoV-2 infection over two epidemic waves in Manaus, Brazil: A serological study of seven thousand blood donors. von Neal Alexander, Christopher Dye, Michael P Busch, Lewis Buss, Carlos A Prete, Oliver J Brady, Paul Mee, Claudia M M Abrahim, Myuki A E Crispim, Allyson G da Costa, Tassila Salomon, Philippe Mayaud, Márcio K Oikawa, Nuno R Faria, Ester C Sabino

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Early Genomic Detection of Cosmopolitan Genotype of Dengue Virus Serotype 2, Angola, 2018 von Sarah C. Hill, Jocelyne Neto de Vasconcelos, Bernardo Gutierrez Granja, Julien Thézé, Domingos Jandondo, Zoraima Neto, Marinela Mirandela, Cruz dos Santos Sebastião, Ana Luísa Micolo Cândido, Carina Clemente, Sara Pereira da Silva, Túlio de Oliveira, Oliver G. Pybus, Nuno R. Faria, Joana Morais Afonso

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Molecular Epidemiology of Mayaro Virus among Febrile Patients, Roraima State, Brazil, 2018–2021 von Julia Forato, Cássio A. Meira, Ingra M. Claro, Mariene R. Amorim, Gabriela F. de Souza, Stefanie P. Muraro, Daniel A. Toledo-Teixeira, Miguel F. Dias, Cátia A. R. Meneses, Rodrigo N. Angerami, Pritesh Lalwani, Scott C. Weaver, Ester C. Sabino, Nuno R. Faria, William M. de Souza, Fabiana Granja, José Luiz Proenca-Modena

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Reinfection by the SARS-CoV-2 Gamma variant in blood donors in Manaus, Brazil von Carlos A. Prete, Lewis F. Buss, Renata Buccheri, Claudia M. M. Abrahim, Tassila Salomon, Myuki A. E. Crispim, Marcio K. Oikawa, Eduard Grebe, Allyson G. da Costa, Nelson A. Fraiji, Maria do P. S. S. Carvalho, Charles Whittaker, Neal Alexander, Nuno R. Faria, Christopher Dye, Vítor H. Nascimento, Michael P. Busch, Ester Cerdeira Sabino

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Mapping environmental suitability of Haemagogus and Sabethes spp. mosquitoes to understand sylvatic transmission risk of yellow fever virus in Brazil. von Sabrina L Li, André L Acosta, Sarah C Hill, Oliver J Brady, Marco A B de Almeida, Jader da C Cardoso, Arran Hamlet, Luis F Mucci, Juliana Telles de Deus, Felipe C M Iani, Neil S Alexander, G R William Wint, Oliver G Pybus, Moritz U G Kraemer, Nuno R Faria, Jane P Messina

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Epidemic Spread of SARS-CoV-2 Lineage B.1.1.7 in Brazil von Filipe R. R. Moreira, Diego M. Bonfim, Danielle A. G. Zauli, Joice P. Silva, Aline B. Lima, Frederico S. V. Malta, Alessandro C. S. Ferreira, Victor C. Pardini, Wagner C. S. Magalhães, Daniel C. Queiroz, Rafael M. Souza, Victor E. V. Geddes, Walyson C. Costa, Rennan G. Moreira, Nuno R. Faria, Carolina M. Voloch, Renan P. Souza, Renato S. Aguiar

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Clearance of Persistent SARS-CoV-2 RNA Detection in a NFκB-Deficient Patient in Association with the Ingestion of Human Breast Milk: A Case Report von Janine S. Sabino, Mariene R. Amorim, William M. de Souza, Lia F. Marega, Luciana S. Mofatto, Daniel A. Toledo-Teixeira, Julia Forato, Rodrigo G. Stabeli, Maria Laura Costa, Fernando R. Spilki, Ester C. Sabino, Nuno R. Faria, Bruno D. Benites, Marcelo Addas-Carvalho, Raquel S. B. Stucchi, Dewton M. Vasconcelos, Scott C. Weaver, Fabiana Granja, José Luiz Proenca-Modena, Maria Marluce dos S. Vilela

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Human movement and environmental barriers shape the emergence of dengue von Vinyas Harish, Felipe J. Colón-González, Filipe R. R. Moreira, Rory Gibb, Moritz U. G. Kraemer, Megan Davis, Robert C. Reiner, David M. Pigott, T. Alex Perkins, Daniel J. Weiss, Isaac I. Bogoch, Gonzalo Vazquez-Prokopec, Pablo Manrique Saide, Gerson L. Barbosa, Ester C. Sabino, Kamran Khan, Nuno R. Faria, Simon I. Hay, Fabián Correa-Morales, Francisco Chiaravalloti-Neto, Oliver J. Brady

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Spread of Chikungunya Virus East/Central/South African Genotype in Northeast Brazil von Antonio Charlys da Costa, Julien Thézé, Shirley Cavalcante Vasconcelos Komninakis, Rodrigo Lopes Sanz-Duro, Marta Rejane Lemos Felinto, Lúcia Cristina Corrêa Moura, Ivoneide Moreira de Oliveira Barroso, Lucineide Eliziario Correia Santos, Mardjane Alves de Lemos Nunes, Adriana Avila Moura, José Lourenço, Xutao Deng, Eric Delwart, Maria Raquel dos Anjos Silva Guimarães, Oliver G. Pybus, Ester C. Sabino, Nuno R. Faria

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A sensitive assay for virus discovery in respiratory clinical samples. von Michel de Vries, Martin Deijs, Marta Canuti, Barbera D C van Schaik, Nuno R Faria, Martijn D B van de Garde, Loes C M Jachimowski, Maarten F Jebbink, Marja Jakobs, Angela C M Luyf, Frank E J Coenjaerts, Eric C J Claas, Richard Molenkamp, Sylvie M Koekkoek, Christine Lammens, Frank Leus, Herman Goossens, Margareta Ieven, Frank Baas, Lia van der Hoek

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Characteristics of Madariaga and Venezuelan Equine Encephalitis Virus Infections, Panama von Luis Felipe Rivera, Carlos Lezcano-Coba, Josefrancisco Galué, Xacdiel Rodriguez, Yelissa Juarez, William M. de Souza, Zeuz Capitan-Barrios, Anayansi Valderrama, Leyda Abrego, Hector Cedeño, Carmela Jackman, Jesse J. Waggoner, Patricia V. Aguilar, Hilda Guzman, Scott C. Weaver, Robert B. Tesh, Sandra López-Vèrges, Christl A. Donnelly, Cassia F. Estofolete, Mauricio L. Nogueira, Nuno R. Faria, Nikos Vasilakis, Amy Y. Vittor, Darci R. Smith, Jean-Paul Carrera

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