Clinical implications of neoepitope landscapes for adult and pediatric cancers by Yang-Yang Feng, Obi L. Griffith, Malachi Griffith

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Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud. by Malachi Griffith, Jason R Walker, Nicholas C Spies, Benjamin J Ainscough, Obi L Griffith

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Best practices for bioinformatic characterization of neoantigens for clinical utility by Megan M. Richters, Huiming Xia, Katie M. Campbell, William E. Gillanders, Obi L. Griffith, Malachi Griffith

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A survey of genomic properties for the detection of regulatory polymorphisms. by Stephen B Montgomery, Obi L Griffith, Johanna M Schuetz, Angela Brooks-Wilson, Steven J M Jones

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Unraveling the chaotic genomic landscape of primary and metastatic canine appendicular osteosarcoma with current sequencing technologies and bioinformatic approaches. by Shirley Chu, Zachary L Skidmore, Jason Kunisaki, Jason R Walker, Malachi Griffith, Obi L Griffith, Jeffrey N Bryan

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Text-mining clinically relevant cancer biomarkers for curation into the CIViC database by Jake Lever, Martin R. Jones, Arpad M. Danos, Kilannin Krysiak, Melika Bonakdar, Jasleen K. Grewal, Luka Culibrk, Obi L. Griffith, Malachi Griffith, Steven J. M. Jones

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Metagenomic Analysis of DNA Viruses with Targeted Sequence Capture of Canine Lobular Orbital Adenomas and Normal Conjunctiva by Elizabeth A. F. Schaefer, Shirley Chu, Kristine M. Wylie, Todd N. Wylie, Obi L. Griffith, Jacqueline W. Pearce, Gayle C. Johnson, Jeffrey N. Bryan, Brian K. Flesner

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Genomic landscape and gene expression profiles of feline oral squamous cell carcinoma by Alana R. Rodney, Zachary L. Skidmore, Jennifer K. Grenier, Obi L. Griffith, Andrew D. Miller, Shirley Chu, Faraz Ahmed, Jeffrey N. Bryan, Santiago Peralta, Wesley C. Warren

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Endothelial cells are a key target of IFN-g during response to combined PD-1/CTLA-4 ICB treatment in a mouse model of bladder cancer by Sharon L. Freshour, Timothy H.-P. Chen, Bryan Fisk, Haolin Shen, Matthew Mosior, Zachary L. Skidmore, Catrina Fronick, Jennifer K. Bolzenius, Obi L. Griffith, Vivek K. Arora, Malachi Griffith

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Integrative genomic analysis reveals low T-cell infiltration as the primary feature of tobacco use in HPV-positive oropharyngeal cancer by Benjamin M. Wahle, Paul Zolkind, Ricardo J. Ramirez, Zachary L. Skidmore, Sydney R. Anderson, Angela Mazul, D. Neil Hayes, Vlad C. Sandulache, Wade L. Thorstad, Douglas Adkins, Obi L. Griffith, Malachi Griffith, Jose P. Zevallos

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Personalized ctDNA micro-panels can monitor and predict clinical outcomes for patients with triple-negative breast cancer by Erica K. Barnell, Bryan Fisk, Zachary L. Skidmore, Kelsy C. Cotto, Anamika Basu, Aparna Anand, Megan M. Richters, Jingqin Luo, Catrina Fronick, Meenakshi Anurag, Robert Fulton, Matthew J. Ellis, Obi L. Griffith, Malachi Griffith, Foluso O. Ademuyiwa

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RNA Sequencing of Tumor-Associated Microglia Reveals Ccl5 as a Stromal Chemokine Critical for Neurofibromatosis-1 Glioma Growth by Anne C. Solga, Winnie W. Pong, Keun-Young Kim, Patrick J. Cimino, Joseph A. Toonen, Jason Walker, Todd Wylie, Vincent Magrini, Malachi Griffith, Obi L. Griffith, Amy Ly, Mark H. Ellisman, Elaine R. Mardis, David H. Gutmann

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F11R is a novel monocyte prognostic biomarker for malignant glioma. by Winnie W Pong, Jason Walker, Todd Wylie, Vincent Magrini, Jingqin Luo, Ryan J Emnett, Jaebok Choi, Matthew L Cooper, Malachi Griffith, Obi L Griffith, Joshua B Rubin, Gregory N Fuller, David Piwnica-Worms, Xi Feng, Dolores Hambardzumyan, John F DiPersio, Elaine R Mardis, David H Gutmann

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SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution. by Christopher A Miller, Brian S White, Nathan D Dees, Malachi Griffith, John S Welch, Obi L Griffith, Ravi Vij, Michael H Tomasson, Timothy A Graubert, Matthew J Walter, Matthew J Ellis, William Schierding, John F DiPersio, Timothy J Ley, Elaine R Mardis, Richard K Wilson, Li Ding

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Decoupling of the PI3K Pathway via Mutation Necessitates Combinatorial Treatment in HER2+ Breast Cancer. by James E Korkola, Eric A Collisson, Laura Heiser, Chris Oates, Nora Bayani, Sleiman Itani, Amanda Esch, Wallace Thompson, Obi L Griffith, Nicholas J Wang, Wen-Lin Kuo, Brian Cooper, Jessica Billig, Safiyyah Ziyad, Jenny L Hung, Lakshmi Jakkula, Heidi Feiler, Yiling Lu, Gordon B Mills, Paul T Spellman, Claire Tomlin, Sach Mukherjee, Joe W Gray

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Truncating Prolactin Receptor Mutations Promote Tumor Growth in Murine Estrogen Receptor-Alpha Mammary Carcinomas by Obi L. Griffith, Szeman Ruby Chan, Malachi Griffith, Kilannin Krysiak, Zachary L. Skidmore, Jasreet Hundal, Julie A. Allen, Cora D. Arthur, Daniele Runci, Mattia Bugatti, Alexander P. Miceli, Heather Schmidt, Lee Trani, Krishna-Latha Kanchi, Christopher A. Miller, David E. Larson, Robert S. Fulton, William Vermi, Richard K. Wilson, Robert D. Schreiber, Elaine R. Mardis

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Correction: Decoupling of the PI3K Pathway via Mutation Necessitates Combinatorial Treatment in HER2+ Breast Cancer. by James E Korkola, Eric A Collisson, Laura M Heiser, Chris Oates, Nora Bayani, Sleiman Itani, Amanda Esch, Wallace Thompson, Obi L Griffith, Nicholas J Wang, Wen-Lin Kuo, Brian Cooper, Jessica Billig, Safiyyah Ziyad, Jenny L Hung, Lakshmi Jakkula, Heidi Feiler, Yiling Lu, Gordon B Mills, Paul T Spellman, Claire Tomlin, Sach Mukherjee, Joe W Gray

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Standard operating procedure for curation and clinical interpretation of variants in cancer by Arpad M. Danos, Kilannin Krysiak, Erica K. Barnell, Adam C. Coffman, Joshua F. McMichael, Susanna Kiwala, Nicholas C. Spies, Lana M. Sheta, Shahil P. Pema, Lynzey Kujan, Kaitlin A. Clark, Amber Z. Wollam, Shruti Rao, Deborah I. Ritter, Dmitriy Sonkin, Gordana Raca, Wan-Hsin Lin, Cameron J. Grisdale, Raymond H. Kim, Alex H. Wagner, Subha Madhavan, Malachi Griffith, Obi L. Griffith

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Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer by Kelsy C. Cotto, Yang-Yang Feng, Avinash Ramu, Megan Richters, Sharon L. Freshour, Zachary L. Skidmore, Huiming Xia, Joshua F. McMichael, Jason Kunisaki, Katie M. Campbell, Timothy Hung-Po Chen, Emily B. Rozycki, Douglas Adkins, Siddhartha Devarakonda, Sumithra Sankararaman, Yiing Lin, William C. Chapman, Christopher A. Maher, Vivek Arora, Gavin P. Dunn, Ravindra Uppaluri, Ramaswamy Govindan, Obi L. Griffith, Malachi Griffith

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The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification by Alex H. Wagner, Lawrence Babb, Gil Alterovitz, Michael Baudis, Matthew Brush, Daniel L. Cameron, Melissa Cline, Malachi Griffith, Obi L. Griffith, Sarah E. Hunt, David Kreda, Jennifer M. Lee, Stephanie Li, Javier Lopez, Eric Moyer, Tristan Nelson, Ronak Y. Patel, Kevin Riehle, Peter N. Robinson, Shawn Rynearson, Helen Schuilenburg, Kirill Tsukanov, Brian Walsh, Melissa Konopko, Heidi L. Rehm, Andrew D. Yates, Robert R. Freimuth, Reece K. Hart

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