Editorial: Systems Biology and the Challenge of Deciphering the Metabolic Mechanisms Underlying Cancer by Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio, Christian Diener

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Filling kinetic gaps: dynamic modeling of metabolism where detailed kinetic information is lacking. by Osbaldo Resendis-Antonio

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“Gestaltomics”: Systems Biology Schemes for the Study of Neuropsychiatric Diseases by Nora A. Gutierrez Najera, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio, Humberto Nicolini

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Uncoding the interdependency of tumor microenvironment and macrophage polarization: insights from a continuous network approach by Ugo Avila-Ponce de León, Ugo Avila-Ponce de León, Aarón Vázquez-Jiménez, Pablo Padilla-Longoria, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio

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Stochastic Analysis of the RT-PCR Process in Single-Cell RNA-Seq by Aarón Vázquez-Jiménez, Osbaldo Resendis-Antonio

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Macrophage Boolean networks in the time of SARS-CoV-2 by Ugo Avila-Ponce de León, Ugo Avila-Ponce de León, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio

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Analysis of Epithelial-Mesenchymal Transition Metabolism Identifies Possible Cancer Biomarkers Useful in Diverse Genetic Backgrounds by Meztli Matadamas-Guzman, Meztli Matadamas-Guzman, Cecilia Zazueta, Emilio Rojas, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio

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MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota by Christian Diener, Sean M. Gibbons, Osbaldo Resendis-Antonio

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Functional modules, structural topology, and optimal activity in metabolic networks. by Osbaldo Resendis-Antonio, Magdalena Hernández, Yolanda Mora, Sergio Encarnación

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Boolean modeling reveals that cyclic attractors in macrophage polarization serve as reservoirs of states to balance external perturbations from the tumor microenvironment by Ugo Avila-Ponce de León, Ugo Avila-Ponce de León, Aarón Vázquez-Jiménez, Meztli Matadamas-Guzmán, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio

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MicroRNAs Regulate Metabolic Phenotypes During Multicellular Tumor Spheroids Progression by Erick Andrés Muciño-Olmos, Erick Andrés Muciño-Olmos, Aarón Vázquez-Jiménez, Diana Elena López-Esparza, Vilma Maldonado, Mahara Valverde, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio

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Transcriptional and Microenvironmental Landscape of Macrophage Transition in Cancer: A Boolean Analysis by Ugo Avila-Ponce de León, Ugo Avila-Ponce de León, Aarón Vázquez-Jiménez, Meztli Matadamas-Guzman, Meztli Matadamas-Guzman, Rosana Pelayo, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio

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Dysbiosis signatures of gut microbiota and the progression of type 2 diabetes: a machine learning approach in a Mexican cohort by Daniel Neri-Rosario, Daniel Neri-Rosario, Yoscelina Estrella Martínez-López, Diego A. Esquivel-Hernández, Jean Paul Sánchez-Castañeda, Jean Paul Sánchez-Castañeda, Cristian Padron-Manrique, Cristian Padron-Manrique, Aarón Vázquez-Jiménez, David Giron-Villalobos, David Giron-Villalobos, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio

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Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli. by Osbaldo Resendis-Antonio, Jennifer L Reed, Sergio Encarnación, Julio Collado-Vides, Bernhard Ø Palsson

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A network perspective on the ecology of gut microbiota and progression of type 2 diabetes: Linkages to keystone taxa in a Mexican cohort by Diego A. Esquivel-Hernández, Yoscelina Estrella Martínez-López, Yoscelina Estrella Martínez-López, Yoscelina Estrella Martínez-López, Jean Paul Sánchez-Castañeda, Jean Paul Sánchez-Castañeda, Daniel Neri-Rosario, Daniel Neri-Rosario, Cristian Padrón-Manrique, Cristian Padrón-Manrique, David Giron-Villalobos, David Giron-Villalobos, Cristian Mendoza-Ortíz, Cristian Mendoza-Ortíz, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio

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Progressive Shifts in the Gut Microbiome Reflect Prediabetes and Diabetes Development in a Treatment-Naive Mexican Cohort by Christian Diener, Christian Diener, María de Lourdes Reyes-Escogido, Lilia M. Jimenez-Ceja, Mariana Matus, Claudia M. Gomez-Navarro, Nathaniel D. Chu, Vivian Zhong, M. Elizabeth Tejero, Eric Alm, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio, Rodolfo Guardado-Mendoza, Rodolfo Guardado-Mendoza

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Evolution of centrality measurements for the detection of essential proteins in biological networks by Mahdi Jalili, Ali Salehzadeh-Yazdi, Ali Salehzadeh-Yazdi, Shailendra Gupta, Shailendra Gupta, Olaf Wolkenhauer, Marjan Yaghmaie, Osbaldo Resendis-Antonio, Kamran Alimoghaddam

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Type 2 diabetes, gut microbiome, and systems biology: A novel perspective for a new era by Yoscelina Estrella Martínez-López, Diego A. Esquivel-Hernández, Jean Paul Sánchez-Castañeda, Daniel Neri-Rosario, Rodolfo Guardado-Mendoza, Osbaldo Resendis-Antonio

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On Deep Landscape Exploration of COVID-19 Patients Cells and Severity Markers by Aarón Vázquez-Jiménez, Ugo Enrique Avila-Ponce De León, Ugo Enrique Avila-Ponce De León, Meztli Matadamas-Guzman, Meztli Matadamas-Guzman, Erick Andrés Muciño-Olmos, Erick Andrés Muciño-Olmos, Yoscelina E. Martínez-López, Yoscelina E. Martínez-López, Thelma Escobedo-Tapia, Thelma Escobedo-Tapia, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio

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Spermiogenesis alterations in the absence of CTCF revealed by single cell RNA sequencing by Ulises Torres-Flores, Ulises Torres-Flores, Fernanda Díaz-Espinosa, Tayde López-Santaella, Rosa Rebollar-Vega, Aarón Vázquez-Jiménez, Aarón Vázquez-Jiménez, Ian J. Taylor, Rosario Ortiz-Hernández, Olga M. Echeverría, Gerardo H. Vázquez-Nin, María Concepción Gutierrez-Ruiz, Inti Alberto De la Rosa-Velázquez, Osbaldo Resendis-Antonio, Osbaldo Resendis-Antonio, Abrahan Hernández-Hernandez

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