Coarse-grained modelling of DNA and DNA self-assembly by Ouldridge, T

Inferring bulk self-assembly properties from simulations of small systems with multiple constituent species and small systems in the grand canonical ensemble. by Ouldridge, T

The robustness of proofreading to crowding-induced pseudo-processivity in the MAPK pathway by Ouldridge, T, Wolde, P

High rates of fuel consumption are not required by insulating motifs to suppress retroactivity in biochemical circuits by Abhishek Deshpande, Thomas E. Ouldridge

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DNA nanotweezers studied with a coarse-grained model of DNA. by Ouldridge, T, Louis, A, Doye, J

Extracting bulk properties of self-assembling systems from small simulations. by Ouldridge, T, Louis, A, Doye, J

DNA nanotweezers studied with a coarse-grained model of DNA by Ouldridge, T, Louis, A, Doye, J

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model. by Ouldridge, T, Louis, A, Doye, J

Plectoneme tip bubbles : coupled denaturation and writhing in supercoiled DNA by Matek, C, Ouldridge, T, Doye, J, Louis, A, Matek, C, Ouldridge, T, Doye, J, Louis, A

Edge-effects dominate copying thermodynamics for finite-length molecular oligomers by Jenny M Poulton, Thomas E Ouldridge

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Thermodynamics of deterministic finite automata operating locally and periodically by Thomas E Ouldridge, David H Wolpert

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Simulation of reversible molecular mechanical logic gates and circuits by Seet, I, Ouldridge, TE, Doye, JPK

The self-assembly of DNA Holliday junctions studied with a minimal model by Ouldridge, T, Johnston, I, Louis, A, Doye, J

Biochemical Szilard engines for memory-limited inference by Rory A Brittain, Nick S Jones, Thomas E Ouldridge

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Force-induced rupture of a DNA duplex: from fundamentals to force sensors by Mosayebi, M, Louis, AA, Doye, JPK, Ouldridge, TE

Exploiting bias in optimal finite-time copying protocols by Daan Mulder, Pieter Rein ten Wolde, Thomas E. Ouldridge

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The effect of topology on the structure and free energy landscape of DNA kissing complexes. by Romano, F, Hudson, A, Doye, J, Ouldridge, T, Louis, A

Simulating a burnt-bridges DNA motor with a coarse-grained DNA model by Šulc, P, Ouldridge, T, Romano, F, Doye, J, Louis, A

A nucleotide-level coarse-grained model of RNA by Šulc, P, Romano, F, Ouldridge, T, Doye, J, Louis, A

Coarse-grained simulations of DNA overstretching. by Romano, F, Chakraborty, D, Doye, J, Ouldridge, T, Louis, A